Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01759 and BPUM_2375
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_01759___yhfT.1.24716.seq
# -bsequence dna-align/BPUM_2375___yhfT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01759___yhfT-BPUM_2375___yhfT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01759___yhfT-BPUM_2375___yhfT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01759___yhfT
# 2: BPUM_2375___yhfT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1654
# Identity: 938/1654 (56.7%)
# Similarity: 938/1654 (56.7%)
# Gaps: 404/1654 (24.4%)
# Score: 2294.5
#
#
#=======================================
BSNT_01759___ 1 ---ATGACAATTACTCATACCTATTCATCTAC-TGCCGAAA-CATCGCCC 45
|..|.|||.||..|.|..|||.||| ||| |||.|||| .|.| ||.
BPUM_2375___y 1 TTGAGAAGAATAACGGAAAGTTATACAT-TACATGCAGAAATGAAC-CCA 48
BSNT_01759___ 46 GGCCGTGTAGCGATCCAGACTGAATCGGAG-----CAAATCACGTACCAT 90
|..|.|.|.||.||| |.||| .|||| |.||||||.|||.|.
BPUM_2375___y 49 GATCATATCGCCATC---ATTGA--TGGAGAAGAACGAATCACTTACGAA 93
BSNT_01759___ 91 GATTGGGATCGGCTTGT----CTCTCAAACCGCA-AATTGGCTGCGGTCA 135
||||||.||..||.||| ||.||| ||| ||| |||.|
BPUM_2375___y 94 GATTGGTATGAGCGTGTCCAGCTATCA----GCACAAT-------GGTTA 132
BSNT_01759___ 136 CAGCCGAGCATGCCGAATCGTGTGGCGATCCTGCTC-----CCAAATAGT 180
||.| ||.|| |||| |.|||.||.
BPUM_2375___y 133 CAAC-----------AAACG------------GCTCATGAGCAAAAAAGA 159
BSNT_01759___ 181 CTGGCGTTTTTA------------------------CAGCTGTTTGCCGG 206
.|.||.|||||| ||..|.|||||.||
BPUM_2375___y 160 GTCGCTTTTTTATTATCGAATGGTGCTTCTTTTCTTCAAATATTTGCTGG 209
BSNT_01759___ 207 AGCCACAGCGGCTGGATGCACAGCCATTCCC-----AT-CGACACACGCT 250
.||..|..|.||.||.||.|||| ||.|||| || ||| |.|
BPUM_2375___y 210 CGCTGCTTCTGCAGGGTGGACAG-CAGTCCCGCTTGATCCGA-----GAT 253
BSNT_01759___ 251 GGAGCCCGGCTGAATGT-----AAGGAGCGGCTGTCCATAAGCAATGCGG 295
||||||..|..|||||| || |.|...||| ||||..|.||.|
BPUM_2375___y 254 GGAGCCGTGAGGAATGTGTTGAAA--AACTTTTGT---TAAGTGAAGCAG 298
BSNT_01759___ 296 ATCTTGTGGTTACTTTAG--CC--TTTTTCAAAAACAAACT-GACA--GA 338
.|||.||..||| |..|| || |.||| |||.|.|.| |||| .|
BPUM_2375___y 299 CTCTCGTCATTA-TCGAGGACCGATATTT---AAATAGATTCGACAAGTA 344
BSNT_01759___ 339 TAGC-CAGACA--CCTGTTGTTTTGCTGGATAACTGTATGGCAGATATTT 385
.||| .||||| |..|||.||| || .||.|||.||||.||
BPUM_2375___y 345 CAGCGTAGACATGCAGGTTCTTT--CT--TTATCTGAATGGAAG------ 384
BSNT_01759___ 386 CTGAAGCAACCGCTGATCC--------------CTTGCCTACCATTG--- 418
..||| || |||.|| ||..|..||.|.||
BPUM_2375___y 385 GGGAA--AA----TGAGCCGTAACACACAAGTTCTATCTAACAAATGTGA 428
BSNT_01759___ 419 -ATCCGGA----GCACCCT---TTTTATATGGGATTTACGTCGGGCTCGA 460
||| || | ||||| ||||||||||||||||||||.||.||.|
BPUM_2375___y 429 CATC--GAAAATG-ACCCTATCTTTTATATGGGATTTACGTCAGGATCAA 475
BSNT_01759___ 461 CAGGAAAACCGAAGGCCTTTACGCGATCTCACCGCTCATGGATAGAGAGC 510
|.||...|||.||.|||||||...||..|||.|..||||||||.||.|||
BPUM_2375___y 476 CGGGTTCACCCAAAGCCTTTATCAGACGTCAGCAGTCATGGATTGAAAGC 525
BSNT_01759___ 511 TTT--------ACCTG-TACAGAAACAGATTTTTCGATT---TCATCAA- 547
||| |.||| |||| |||.||.| |||||||
BPUM_2375___y 526 TTTCGAACGACAGCTGATACA----------TTTGGAATCACTCATCAAG 565
BSNT_01759___ 548 ATGACACGGTATTGATTCCCGGGACGTTAATGTCCTCTCACTTCTTATAC 597
||.| .||..||||..|.||.||..|..|.|||||||||||.|||||.
BPUM_2375___y 566 ATCA---TGTTCTGATAGCAGGTACACTCTTATCCTCTCACTTTTTATAT 612
BSNT_01759___ 598 GGGGCAGTCAGCACTTTGTTTCTTGGAGGAACCGT----TTGTTTGCTGA 643
||.||..||||.||.||||...||||.||.||.|| ||.||.|
BPUM_2375___y 613 GGTGCCATCAGTACATTGTACTTTGGCGGCACAGTGACGTTATTAG---- 658
BSNT_01759___ 644 AAAAGTTTTCTCCTGCCAAAGCGAAGGAATGGCTGTGCCGTGAATCCA-- 691
||||.||..|.||.|..|||||.|||.|| |||.|..|..||
BPUM_2375___y 659 AAAAATTCACACCAGTGAAAGCAAAGAAA-------GCCTTACAGACAGG 701
BSNT_01759___ 692 -----TCAGTGTTCTCTATACCGTACCGACGATGACAGA--CGCCCTCGC 734
|.|.|||..|.|||||.||.|||||.|||||.|| || |.||
BPUM_2375___y 702 AGATTTGACTGTGATGTATACTGTTCCGACAATGACGGAATCG---TTGC 748
BSNT_01759___ 735 ---AAGGATTGAGGGTTTTCCCGA-------CAGTCCC-----GTCAAAA 769
|| ||.||.|.|||| || ||.||.| |
BPUM_2375___y 749 TGGAA--ATAGACGCTTTT---GAGAGAGAGCATTCGCTGCTTG------ 787
BSNT_01759___ 770 TCATTTCATCCGGCGCAGACTGGCCGGCAGAATCC----AAGGAGAAGCT 815
||||.|||||.||.|||||.||| ||| |.||| |||.|..|.||
BPUM_2375___y 788 TCATATCATCTGGAGCAGATTGG--GGC--ATTCCTTCAAAGAAACAACT 833
BSNT_01759___ 816 TGCCGCTG------CATGGCCTCATCTCAAGCTGTACGATTTTTACGGCA 859
|| || .|| ||||||.|.|...|.|..|||||||||||.|
BPUM_2375___y 834 TG----TGACGAACAAT--CCTCATGTGACATTTTTTGATTTTTACGGTA 877
BSNT_01759___ 860 CATCAGAGCTTAGTTTTGTGAC---GTTTTCTTCACCGGAA-GA----CA 901
|||||||..|.||.|||||..| .||.|||||| || || |.
BPUM_2375___y 878 CATCAGAATTAAGCTTTGTATCCTATTTATCTTCA----AATGACTTTCT 923
BSNT_01759___ 902 GCAAACGGAAGCCGCATTCAG-CGGGCCGCCCTTTTCATAATGTCCGGAT 950
|||| |||||...|||.| |||.|..||.||.|| ||| .||
BPUM_2375___y 924 GCAA----AAGCCTTCTTCTGTCGGACGACCATTCTC------TCC-CAT 962
BSNT_01759___ 951 CGAAATCCTCAACGCTG----GAGGAGAAC-----------GCTGCCAGC 985
..|||| || ||||.||.| .||||||||
BPUM_2375___y 963 TCAAAT---------TGAAGTGAGGCGAGCCGATCAAACTGTCTGCCAGC 1003
BSNT_01759___ 986 C--AGGAGAAATCGGAAAAATATTTGTCAAAAGCCCGATGAGGTTTTCCG 1033
| |.||||.| ||||.|||.|.|||.||.|||||||||...|||.|.|
BPUM_2375___y 1004 CAAATGAGACA--GGAAGAATTTATGTTAAGAGCCCGATGTCTTTTGCAG 1051
BSNT_01759___ 1034 GCTA-----------TGTGAACGGCAGCACACCAGATGAATGGATGACAG 1072
|||| ||.||.|| ||.||.||.|||.||||||
BPUM_2375___y 1052 GCTACTTACATGAGGTGAGACCG--------CCGGAGGAGTGGCTGACAG 1093
BSNT_01759___ 1073 TAGATGATATGGGCTACGTTGATGAAGAGGGCTTTCTATACATATCA--G 1120
|..||||||||||.|...|.||||||||.||||.|.||| ||||.| |
BPUM_2375___y 1094 TTTATGATATGGGGTGGCTGGATGAAGACGGCTATTTAT--ATATGAGTG 1141
BSNT_01759___ 1121 GAAGAGAAAACGGGATGATTGTGTACGGAGGATTAAATATTTTCCCAGAA 1170
|..|.|||||.||.|||||.||.||.||||||.|.||||||||.|||||.
BPUM_2375___y 1142 GCCGTGAAAATGGCATGATCGTCTATGGAGGACTGAATATTTTTCCAGAG 1191
BSNT_01759___ 1171 GAAATTGAACGTGTGCTTCTCGCCTG----CCCAGAGGTTGAAAGCG--C 1214
||||||||.|||||||| ...|| .|||||||| .||||| |
BPUM_2375___y 1192 GAAATTGAGCGTGTGCT----AAATGAACAGCCAGAGGT--GAAGCGATC 1235
BSNT_01759___ 1215 GGCTGTCGTTGGCATTCCCGACGAGTATTGGGGAGAAATCGCTGTAGCTG 1264
||.|||.||||||.||||.|||..|||.|||||.||||||.|||| ||
BPUM_2375___y 1236 GGTTGTAGTTGGCGTTCCTGACCCGTACTGGGGTGAAATCCCTGT---TG 1282
BSNT_01759___ 1265 TCATTCTTGGAAACGCTAATGCCAGAACACTGAAA---------GCCTGG 1305
.||||.||| ||| ||.|.||| ||||.||| ||..|.
BPUM_2375___y 1283 CCATTATTG--AAC---AAAGGCAG--CACTCAAAGACAGTTCGGCAAGC 1325
BSNT_01759___ 1306 TGT-AAACAGAAATTAGCCTCCTATAAAATTCCGAAAAAATGG---GTGT 1351
||| |||.|.|||.|.||..|.||.||..|.||.||||||||| ||..
BPUM_2375___y 1326 TGTCAAAAAAAAACTGGCAGCTTACAAGGTACCTAAAAAATGGCTAGTCA 1375
BSNT_01759___ 1352 TTG--CAGA-CAGCTTGCCGGAAACGAGCAGCGGAAAAATTGCCCGTTCC 1398
||| ||.| || || |||||...||||||.|||||.||.|||.||
BPUM_2375___y 1376 TTGATCAAATCA--TT----GAAACATCCAGCGGGAAAATAGCACGTGCC 1419
BSNT_01759___ 1399 AGAGTGAAAAAATGGCTGGAAGAG-----AGTGT-------ACAGTATAA 1436
||..|||||.|.|| ||.|||| |.||| .|||||.
BPUM_2375___y 1420 AGTATGAAACAGTG---GGCAGAGGAACAATTGTCATGCAAGCAGTAA-- 1464
BSNT_01759___ 1437 ATGA 1440
BPUM_2375___y 1464 ---- 1464
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