Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01757 and BPUM_2374
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_01757___yhfS.1.24716.seq
# -bsequence dna-align/BPUM_2374___yhfS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01757___yhfS-BPUM_2374___yhfS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01757___yhfS-BPUM_2374___yhfS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01757___yhfS
# 2: BPUM_2374___yhfS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1185
# Identity: 714/1185 (60.3%)
# Similarity: 714/1185 (60.3%)
# Gaps: 186/1185 (15.7%)
# Score: 1824.5
#
#
#=======================================
BSNT_01757___ 1 ATGAATGCGGTTATTATTGATGCAAAACGAACGATCTTTGGAAATCAAAA 50
|||.|.||.||.|||.|..|.||||||||.||...|||.||..||.||||
BPUM_2374___y 1 ATGCAAGCAGTAATTGTACAAGCAAAACGGACACCCTTCGGTGATAAAAA 50
BSNT_01757___ 51 CGGACTGCTGAAGCCCT-TCCTGCCGGAGGATTTGGCGGCTCCCATCATC 99
.||..|||||||....| ||.| ||.|||.|.||.||.||.||..|.||.
BPUM_2374___y 51 TGGGATGCTGAAAAATTATCGT-CCAGAGCAATTAGCCGCGCCTCTTATT 99
BSNT_01757___ 100 CG----CTGTCTCAGCCGAAAGCTAGAGGATCAAG-TTGACGAGGTCATT 144
|| .||||| |||| ||||.|.| ..|||||..|.||.
BPUM_2374___y 100 CGGTATTTGTCT------AAAG-----GGATGACGCCGGACGATATTATA 138
BSNT_01757___ 145 CTCGGAAACGCTACTGGCA-GAGGCGGC---AACCTGGCCAGACTGTCAG 190
.|.|||||.| |.|.| |||||||| ||..|||||.|.|||||..
BPUM_2374___y 139 TTAGGAAATG----TTGTAGGAGGCGGCGGGAATATGGCCCGTCTGTCCT 184
BSNT_01757___ 191 CCCTTCAAGCCGGACTGCCTTTATCAGTTCCCGGAATGACAATTGACAGA 240
|..|..||||.||.||..|||||...||.||.||.||||||.||||.||.
BPUM_2374___y 185 CATTAGAAGCAGGGCTTTCTTTAGGGGTACCTGGTATGACAGTTGATAGG 234
BSNT_01757___ 241 CAGTGCGGCTCCGGCCTTGAAGCTGTGCGCTATGCCTGCAGCCTTATTCA 290
|||||.|..||.||.||.|||||..|.||....||.|||..|.|..||.|
BPUM_2374___y 235 CAGTGTGCTTCAGGTCTAGAAGCCATCCGAACAGCTTGCGTCATGGTTAA 284
BSNT_01757___ 291 AGCAGGAGCCGGCACGATGTATATCGCGGGCGGCTCAGAAAGCA----GC 336
|.||||.|..|||.|.|||||||||||.|||||..|.||||||| |
BPUM_2374___y 285 ATCAGGGGAAGGCTCAATGTATATCGCTGGCGGGACTGAAAGCATTTCG- 333
BSNT_01757___ 337 AGCCAATCCCCTTTTTCAGAACGGGCTCGCTTTTCTCCAG-ATGCGATCG 385
|| |||.||..|...||||...||.||||||||.||.| ||| |||.|
BPUM_2374___y 334 AG---ATCACCAATGAAAGAAAAAGCCCGCTTTTCACCGGAATG-GATAG 379
BSNT_01757___ 386 GCGATCCAGACATGGGCATTGCGGCAGAATATACGGCTGCACGCTATTCC 435
|.|||||.|..|||||....||.|||||....||||||.|..|.|.|||.
BPUM_2374___y 380 GAGATCCGGCTATGGGAGAAGCAGCAGAGCTGACGGCTTCTAGATTTTCT 429
BSNT_01757___ 436 ATCAGCAG--AAGCATGCAGGATGAGTACGCGCTTCTCAGC--------- 474
.|.|..|| |||.| ||.|||||.||.||||...|.|||
BPUM_2374___y 430 GTGACAAGGAAAGAA--CAAGATGACTATGCGCAATTAAGCTGGGAAAGA 477
BSNT_01757___ 475 --CATCAACGC-AGCAGGAACGCG---CATGAGGAAGGATTTTACCGTGA 518
.||..|||| |.|| ||||.| ||| ||| .|||
BPUM_2374___y 478 AGTATAGACGCAATCA--AACGTGGTACAT--------ATT-----CTGA 512
BSNT_01757___ 519 AGAAGTTGTTGCTCTCGGGGAATTGGAGACGGACGAAGCATTTTTGAAAA 568
||||.|.|||.| .||| |||||||..|||||...||||
BPUM_2374___y 513 AGAAATCGTTAC--------GATT---GACGGACTGAGCATAGATGAA-- 549
BSNT_01757___ 569 CGCGGCC-----AATA-----------GAAGCGATTATTCCCCGTGCAAA 602
|||||| |||| .|||| |.||||..||.|||||
BPUM_2374___y 550 -GCGGCCGTGAAAATAAGACCTATGGCAAAGC--TGATTCAGCGGGCAAA 596
BSNT_01757___ 603 GCCGG--TTTTCGACACCAGCTCCGGAA------CAGTCACAGCAGCCAA 644
|||.| |||| ||| |||||| |.|||||.||.|||||
BPUM_2374___y 597 GCCTGTATTTT---CAC-----CCGGAAAAGGATCTGTCACTGCCGCCAA 638
BSNT_01757___ 645 CAGCAGTGGCATAGCAGACGGAGCAGCGGCTCTTTTGGTAATGGA----- 689
.|||.||.....||||||.||.|||||.||..||.|.||.|||||
BPUM_2374___y 639 TAGCTGTAAAGAAGCAGATGGTGCAGCCGCAGTTGTTGTGATGGAAAGAT 688
BSNT_01757___ 690 -------AGAAGAAAAAGCGGCAGCCCTGGGACTTAAGCCTGTGCTTCGG 732
|||.|.||| |||| .||.||||..||||.||.
BPUM_2374___y 689 CGCAGGCAGAGGCAAA-----------TGGG-TTTCAGCCAATGCTGCGA 726
BSNT_01757___ 733 TTTATCGGCAGCGCTGTCAGCGG-GATTCACCCCAACTATCCGCCCGCGG 781
|.|..|||.||.|||||.| ||| |||.||.|||||.|.|||..|.||.|
BPUM_2374___y 727 TATGCCGGAAGTGCTGTGA-CGGCGATGCATCCCAATTTTCCAGCTGCTG 775
BSNT_01757___ 782 CACCGGTTGATGCGATCCGTAATCTCTTACATACACACGATGTAACAC-- 829
|.|||.||||||||||....||.||..||.|| ||.|| |.||..|
BPUM_2374___y 776 CGCCGATTGATGCGATGAAGAAACTTCTAGAT---CAAGA-GAAAATCAA 821
BSNT_01757___ 830 --CTGAGGATATCGGTT----TATTTGAAATCAATGAAGCCTTTGCCGTC 873
|.|||||| ||| |.|||||||||||||||||||||||..|.
BPUM_2374___y 822 GGCAGAGGAT----GTTGCACTGTTTGAAATCAATGAAGCCTTTGCTCTG 867
BSNT_01757___ 874 AAAATTTG---TGTCTGCTCGCAAGAACTCGGCATTCCCTTTTCA-AAAA 919
|||| |.| ||..||||||.|.| ||.|..||| ||||.|.| |..|
BPUM_2374___y 868 AAAA-TAGCGCTGATTGCTCGGACG--CTAGATATT-CCTTATGACAGGA 913
BSNT_01757___ 920 TCAATGTGCGCGGCGGCGCA-TTAGCTCTTGGCCATCCGTACGGTGCATC 968
|||||..|.|.||.||.||| ||.| ||||||.|||||.||..|.|||||
BPUM_2374___y 914 TCAATAAGAGAGGTGGTGCACTTTG-TCTTGGTCATCCATATAGCGCATC 962
BSNT_01757___ 969 AGGTGCAGCTCTGGTAACCAGATTGTTTTATGAAGCGAAAAGACG----- 1013
|||.||.||..||.|....|||.|||||||.|||||| ||
BPUM_2374___y 963 AGGAGCTGCGATGATGGTGAGACTGTTTTACGAAGCG------CGCACCT 1006
BSNT_01757___ 1014 GACAGACTGTCAA--TATGTTGTTGCAGCCATCGGAAGCGGCGGCGGAAT 1061
.||.||.|| .|| |||||..|.||.||.||.||.||.||.|||||..|
BPUM_2374___y 1007 TACCGAATG-GAAGCTATGTCATGGCCGCAATTGGGAGTGGTGGCGGCGT 1055
BSNT_01757___ 1062 TGGACTGGCTTTATTATTTGAAGTTCTTGCATAG- 1095
.||..|.||..||||||.|.|||||||..||| |
BPUM_2374___y 1056 CGGTTTAGCCGTATTATGTCAAGTTCTGTCAT-GA 1089
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