Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03970 and BPUM_2371
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:27
# Commandline: needle
# -asequence dna-align/BSNT_03970___yrrN.1.24716.seq
# -bsequence dna-align/BPUM_2371___yrrN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03970___yrrN-BPUM_2371___yrrN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03970___yrrN-BPUM_2371___yrrN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03970___yrrN
# 2: BPUM_2371___yrrN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 990
# Identity: 665/990 (67.2%)
# Similarity: 665/990 (67.2%)
# Gaps: 120/990 (12.1%)
# Score: 2122.0
#
#
#=======================================
BSNT_03970___ 1 ATGAAAAAACCAGAGCT-CTTAGTGACGCCGACGAGCA------CAGCGG 43
||||||||||||||..| ||| ||||||| |.|||| |||
BPUM_2371___y 1 ATGAAAAAACCAGAATTGCTT-GTGACGC---CAAGCAAGGTGTCAG--- 43
BSNT_03970___ 44 ACATTT--TGCCGCTCATACAGGCGGGGGCAACTGCGTTTTTAGTTGGGG 91
||.| ||||..|.||..|||||||.||...|||..|.|||.|.||.|
BPUM_2371___y 44 --ATGTACTGCCATTAATCGAGGCGGGAGCTGATGCACTCTTAATAGGCG 91
BSNT_03970___ 92 AACAGAGATACGG-------CTTGAGATTAGCCGGAGAATTTTCTCGTGA 134
||||.|.|||||| ||| ||.||.||.|||||..|.||
BPUM_2371___y 92 AACAAACATACGGTATTCGTCTT-------GCAGGCGAGTTTTCAAGAGA 134
BSNT_03970___ 135 AGATGT--AACAAAAGCCGTAGAGATTGCTCACA-AAGAAGGAGC--AAA 179
|||||| ||||.| |.||.|||.|| ||||| |||.|.|| | |||
BPUM_2371___y 135 AGATGTGAAACAGA--CGGTTGAGCTT--TCACATAAGCATGA-CAAAAA 179
BSNT_03970___ 180 AGTATACGTTGCTGTAAATGCAATTTTCCATAACGATAAAGTG--GGTGA 227
|||.||.||.||..|.|||||||||||.|||||.|||...||| |.|
BPUM_2371___y 180 AGTGTATGTGGCAATGAATGCAATTTTTCATAATGATCGTGTGCAGCT-- 227
BSNT_03970___ 228 GCTTGGCGAATATCTGGCTTTCTTAGCAGAAGCCGGTGTCGATGCA---- 273
||||||.|| ||.||| |.||..|.||||||||
BPUM_2371___y 228 GCTTGGAGA---------TTACTT------AACCTTTCTCGATGCATTAA 262
BSNT_03970___ 274 ---------GCG--GTATTCGGCGATCCTGCCGTGCTGATGGCTGCCCGT 312
||| ||.||.||.||.||.||.|||.|.|||||.||....
BPUM_2371___y 263 ACGTAGATGGCGTCGTCTTTGGAGACCCAGCTGTGATCATGGCCGCTAAA 312
BSNT_03970___ 313 GAATC-----TGCGCCTGCTCTGAAGCTTCATTGGAGCACAGAAACGACA 357
|||.| |..|| |||||.||.||.|||||.|||||||||||.
BPUM_2371___y 313 GAAACAGGGGTAAGC-----CTGAATCTCCACTGGAGTACAGAAACGACT 357
BSNT_03970___ 358 GGCACCAACTATTATACATGCAACTACTGGGGACGCAAGGGTGCGGCGCG 407
||.||.||||||||.||.||.|||||||||||..|.||.||.||..||||
BPUM_2371___y 358 GGGACAAACTATTACACTTGTAACTACTGGGGCAGAAAAGGCGCAACGCG 407
BSNT_03970___ 408 CTCTGTGCTTGCCAGAGAATTAAACATGGACAGCATTGTTGAGATTAAAG 457
..||||.|||||.|.||||.|.|||||||||||..|..|.||.||.||||
BPUM_2371___y 408 TGCTGTTCTTGCGAAAGAACTGAACATGGACAGTGTCATCGACATCAAAG 457
BSNT_03970___ 458 AAAATGCGGAAGTCGAAATTGAAATCCAGGTGCATGGAATGACATGCATG 507
|||||||.||.||.|||||.|||||.||.||.|||||.||||||||.|||
BPUM_2371___y 458 AAAATGCCGAGGTGGAAATCGAAATTCAAGTCCATGGCATGACATGTATG 507
BSNT_03970___ 508 TTCCAATCGAAGCGTTCTTTGATTGGAAACTATTTTGAATATCAGGGCAA 557
||||||||.||||||.|..|.|||||.|||||.|||||||||||||||||
BPUM_2371___y 508 TTCCAATCAAAGCGTACGCTTATTGGCAACTACTTTGAATATCAGGGCAA 557
BSNT_03970___ 558 AGTCATGGACATTGAA---AGAAAGAAAAAAGAATCAGGCATGTTTTTAC 604
|...||||||.|.||| |||||.|...|.|| |||..|.||..|.|
BPUM_2371___y 558 ACAAATGGACGTCGAAGGCAGAAATATGGAGGA---AGGGCTATTCCTTC 604
BSNT_03970___ 605 ACGATAAAGAACGTGATAATAAATATCCGATTTTCGAAGATGAAAACGGC 654
|.||..|.||.|||.|.||.||||||||.||||||||.||||.||||||.
BPUM_2371___y 605 ATGACCAGGAGCGTCAAAACAAATATCCTATTTTCGAGGATGCAAACGGT 654
BSNT_03970___ 655 ACTCACATCATGAGCCCGAACGATGTGTGCATCATTGATGAGCTCGAGGA 704
|||||.||.|||||.||.||.||||||||.||.|||||.||..|.||.||
BPUM_2371___y 655 ACTCATATTATGAGTCCAAATGATGTGTGTATGATTGACGAATTAGAAGA 704
BSNT_03970___ 705 ATTGATAGATGCCGGAATTGATTCTTTCAAAATCGATGGTGTTTTGAAAA 754
|||..|.|||||.||.||.||.||.||.|||||.||.||..||||.||..
BPUM_2371___y 705 ATTTGTTGATGCAGGCATCGACTCATTTAAAATTGACGGAATTTTAAAGT 754
BSNT_03970___ 755 CGCCTGAATACCTAATAGAAGTCAC----CAAAATGTACAGAGAAGCAAT 800
|.|.|...||..|.|.||||||.|| | |.||.|||.|||||||
BPUM_2371___y 755 CACTTTCTTATATGACAGAAGTGACGTCTC----TATATAGAAAAGCAAT 800
BSNT_03970___ 801 TGATTTGT--GCGTGGAAAACCGTGACGAA------TACGAAGCGAAAAA 842
||||||.| || ||| ||||.|| ||.||||...|.||
BPUM_2371___y 801 TGATTTATTAGC------AAC--TGACAAAGACGCGTATGAAGATCAGAA 842
BSNT_03970___ 843 AGAAGACTGGATCGAA-CGCATTGAA-AGCATCCAGCCAGTAAACAGAAA 890
|||.||||||.| ||| ||.|||||| || ||.||||||||.||..|...
BPUM_2371___y 843 AGAGGACTGGGT-GAAGCGGATTGAAGAG-ATTCAGCCAGTGAATCGTTC 890
BSNT_03970___ 891 AATTGATACCGGATTCTTCTTCAAGGAAACGGTTTATTAA 930
.||||||||.||.||||||||.||.|||||||||||||||
BPUM_2371___y 891 GATTGATACAGGGTTCTTCTTTAAAGAAACGGTTTATTAA 930
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