Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03968 and BPUM_2369
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:27
# Commandline: needle
# -asequence dna-align/BSNT_03968___udk.1.24716.seq
# -bsequence dna-align/BPUM_2369___udk.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03968___udk-BPUM_2369___udk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03968___udk-BPUM_2369___udk.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03968___udk
# 2: BPUM_2369___udk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity: 474/655 (72.4%)
# Similarity: 474/655 (72.4%)
# Gaps: 41/655 ( 6.3%)
# Score: 1685.0
#
#
#=======================================
BSNT_03968___ 1 ATGGGTAAGAATCCAGTAGTCATTGGAATCGCAGGAGGTTCCGGTTCAGG 50
|||.|.|..||.|||||.|||||||||||.||.||.||.||.||||||||
BPUM_2369___u 1 ATGAGGAGTAAACCAGTGGTCATTGGAATTGCTGGCGGCTCGGGTTCAGG 50
BSNT_03968___ 51 AAAAACGAGTGTCACACGGTCCATTTATGAACAGTTTAAAGGACACTCAA 100
.||||||||.|||||....||.||.||||||.|.|||||||||||.||.|
BPUM_2369___u 51 TAAAACGAGCGTCACCAATTCAATCTATGAAAAATTTAAAGGACATTCCA 100
BSNT_03968___ 101 TTTTAATGATCCAGCAGGACCTTTATTATAAAGACCAAAGCCATCTTCCG 150
|..|.|||.|.|||||.||..|.|||||.|||.|.|||||.|||.|.||.
BPUM_2369___u 101 TCCTCATGCTACAGCAAGATTTATATTACAAAAATCAAAGTCATATGCCA 150
BSNT_03968___ 151 TTTGAAGAAAGGCTGAACACAAACTACGATCATCCGCTTGCGTTTGATAA 200
||||||||..|.|||...||.|||||.|||||||||||.||.||.||.||
BPUM_2369___u 151 TTTGAAGAGTGTCTGCTTACGAACTATGATCATCCGCTCGCATTCGACAA 200
BSNT_03968___ 201 TGAC----TATTTAATCGAGCATATT----CAGGATCTATT-------GA 235
|||| |.||| |||||| || ||| ||.|| ||
BPUM_2369___u 201 TGACCTGATGTTT----GAGCAT-TTGGAACAG---CTCTTAAGGTACGA 242
BSNT_03968___ 236 ATTACCGCCCGATTGAAAAGCCGATTTATGACTATAAGCTTCACACACGT 285
|| |.||||||||.||.||.|||||.|..|||||..||||||||
BPUM_2369___u 243 AT-------CCATTGAAAAACCAATATATGATTTCAAGCTCAACACACGT 285
BSNT_03968___ 286 TCAGAAGAAACGGTTCACGTAGAGCCAAAGGATGTTATTATCCTTGAAGG 335
|||||||||||.||.||.||.||.|||||||||||.||.|||.|||||||
BPUM_2369___u 286 TCAGAAGAAACTGTCCATGTTGAACCAAAGGATGTAATCATCGTTGAAGG 335
BSNT_03968___ 336 CATTCTTGTTCTTGAAGACAAAAGGCTTCGTGATCTGATGGATATCAAGC 385
|||..|||...|.||||||.||.|.||..|.||..|.||||||||.||.|
BPUM_2369___u 336 CATCTTTGCATTAGAAGACGAACGCCTAAGAGACTTAATGGATATTAAAC 385
BSNT_03968___ 386 TTTATGTTGATACGGACGCTGACTTGCGTATCATCAGACGGATTATGAGA 435
|.|||||.|||||.||.||.||..||||.|||||..|.||.|||.|..|.
BPUM_2369___u 386 TATATGTCGATACAGATGCAGATCTGCGCATCATTCGCCGCATTTTACGC 435
BSNT_03968___ 436 GATATTAATGAGCGCGGACGCTCTATTGATTCTGTCATTGAACAATATGT 485
||||..||.||..|.||.||.||.||.||||||||.||||||||.|||||
BPUM_2369___u 436 GATACGAAAGAAAGAGGCCGTTCAATCGATTCTGTGATTGAACAGTATGT 485
BSNT_03968___ 486 GTCAGTGGTCCGTCCGATGCATAACCAATTCGTCGAGCCGACGAAACGAT 535
.||.||.|||||.|||||||||||.||||||.|.||.|||||.||.||||
BPUM_2369___u 486 ATCTGTTGTCCGACCGATGCATAATCAATTCATTGAACCGACTAAGCGAT 535
BSNT_03968___ 536 ACGCTGATATTATTATCCCGGAAGGCGGTCAGAATCACGTCGCAATTGAT 585
||||.|||||.||.|||||.||||||||.||.|||||.||.||.||.||.
BPUM_2369___u 536 ACGCCGATATCATCATCCCAGAAGGCGGCCAAAATCATGTGGCGATCGAC 585
BSNT_03968___ 586 CTGATGGTCACAAAAATTCAAACCATTCTTGAACAAAAC---GC-GATTT 631
.|.|||||.||||||||||||||||||||| ||||.| || ||
BPUM_2369___u 586 TTAATGGTGACAAAAATTCAAACCATTCTT---CAAAGCCGAGCAGA--- 629
BSNT_03968___ 632 TGTAA 636
||||
BPUM_2369___u 630 -GTAA 633
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