Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03962 and BPUM_2364
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_03962___yrzA.1.24716.seq
# -bsequence dna-align/BPUM_2364___yrzA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03962___yrzA-BPUM_2364___yrzA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03962___yrzA-BPUM_2364___yrzA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03962___yrzA
# 2: BPUM_2364___yrzA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 244
# Identity: 143/244 (58.6%)
# Similarity: 143/244 (58.6%)
# Gaps: 50/244 (20.5%)
# Score: 444.0
#
#
#=======================================
BSNT_03962___ 1 ------------------------------ATGAATTTTCAATTAGATCT 20
|||.|||||||.||.|||.|
BPUM_2364___y 1 ATGAATGAAGAGTATGGAGAGGTGAATCAAATGGATTTTCAGTTGGATTT 50
BSNT_03962___ 21 GATTAAAGACAAAGTGGAATTTTTTGAAGCGGCTTCATTGCAAGAGCTTG 70
..|.||.||.|||.|.|||||.||||||||..|.||.||..||||.||||
BPUM_2364___y 51 TCTAAAGGATAAAATTGAATTCTTTGAAGCATCGTCTTTAAAAGAACTTG 100
BSNT_03962___ 71 AAAAGAAAATCAATACACAAATTGAAAACAATAAAGCCATCATGCT--CC 118
||.|.||.|||.|.|.||||||||||.|.|||.|.|||||..|||| ||
BPUM_2364___y 101 AACAAAAGATCCAAAAACAAATTGAACATAATCAGGCCATTCTGCTGACC 150
BSNT_03962___ 119 GGGTGAAATCTGTTTCA--CACCAAACTGCTGTGGCAGAAGGAAGAATAT 166
||..|.|||| ||| ||.|||||..|||||...||.|...||||.|
BPUM_2364___y 151 --GTTCATTCTG--TCAGTCATCAAACGACTGTGATCGATGACCGAATTT 196
BSNT_03962___ 167 TGTACAGCGCGGTGGTTCATTTCGCAGCTGAAGC------CTAA 204
||||.|..|||||.|||||||| |.|.|| ||||
BPUM_2364___y 197 TGTATACAGCGGTTGTTCATTT------TAAGGCGAATATCTAA 234
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