Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03959 and BPUM_2362
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_03959___mtn.1.24716.seq
# -bsequence dna-align/BPUM_2362___mtnN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03959___mtn-BPUM_2362___mtnN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03959___mtn-BPUM_2362___mtnN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03959___mtn
# 2: BPUM_2362___mtnN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 709
# Identity: 511/709 (72.1%)
# Similarity: 511/709 (72.1%)
# Gaps: 50/709 ( 7.1%)
# Score: 1855.0
#
#
#=======================================
BSNT_03959___ 1 ------------------------ATGGAAGAGGAAGTTACCATCTTAAG 26
||||||||.|||||.||.||.|||||
BPUM_2362___m 1 TTGAAAATCGCTGTCATAGGTGCAATGGAAGAAGAAGTGACGATATTAAG 50
BSNT_03959___ 27 AGACAAACTTGAAAATGCAAAAACAGAAACGATCGCACACTGTGAATTTA 76
|||..||||..|.|||||.|.|..|||||..|||||....||||||||.|
BPUM_2362___m 51 AGATCAACTAAAGAATGCTACACAAGAAAACATCGCTGGGTGTGAATTCA 100
BSNT_03959___ 77 CAACAGGCGAATATGAAGGAACTGAAGTGATTCTTTTAAAATCAGGAATT 126
|||||||.|.||||||||..|..|||||||||.|.|||||||||||.|||
BPUM_2362___m 101 CAACAGGTGTATATGAAGATAAAGAAGTGATTTTATTAAAATCAGGGATT 150
BSNT_03959___ 127 GGAAAAGTAAATGCTGCTATCAGCACGACGCTTCTGCTTGACCG-TTACA 175
||||||||.|||||.||..|||||||.||.|||||||||||.|| ||.|
BPUM_2362___m 151 GGAAAAGTGAATGCAGCGGTCAGCACAACACTTCTGCTTGATCGCTTTC- 199
BSNT_03959___ 176 AGCCTGATTATGTCATTAACACAGGCTCAGCCGGCGGATTTCATCATACA 225
||||.||||||||.||.||.|||||.|||||.|||||.||.|||||.|||
BPUM_2362___m 200 AGCCAGATTATGTGATCAATACAGGATCAGCTGGCGGTTTCCATCACACA 249
BSNT_03959___ 226 TTGAATGTAGGGGATGTCGTCATTTCCACTGACGTTCGCCACCATGATGT 275
||.||||||||||||.|.||.||.||.|||||||||.|.||.||||||||
BPUM_2362___m 250 TTAAATGTAGGGGATATTGTGATCTCTACTGACGTTAGACATCATGATGT 299
BSNT_03959___ 276 AGACGTAACGGCTTTTGACTATGAATACGGCCAAGTGCCGGGTCTTCCGG 325
.||.||.|||...|||.|.||.||||||||.|||||.||.||..|.||.|
BPUM_2362___m 300 GGATGTCACGATCTTTAATTACGAATACGGACAAGTACCAGGATTGCCCG 349
BSNT_03959___ 326 CTGCTTATGCGGCGGATGAAAAGC---TGATCAGCATCACTGAAGAAGCG 372
||||||.||..||.||.||||||| ||| ||| |..|.||.|||.||
BPUM_2362___m 350 CTGCTTTTGTTGCAGACGAAAAGCTTGTGA--AGC-TGGCAGAGGAATCG 396
BSNT_03959___ 373 GTATCTGAACTCGACGGCATTCAGGTTGCAAAAGGAACGATTGCAACAGG 422
|..|..||..||||....|||||.||.||||||||||||||||||||.||
BPUM_2362___m 397 GCTTTAGAGATCGATCATATTCAAGTGGCAAAAGGAACGATTGCAACCGG 446
BSNT_03959___ 423 CGATTCTTTCATGAACGATCCGAAGCGGGTTGAAGAG-GTGCGTGCGAGA 471
.|||||.||.|||||.||||||||.||.|| || ||..|||.||||
BPUM_2362___m 447 AGATTCATTTATGAATGATCCGAATCGTGT-----AGCGTTTGTGAGAGA 491
BSNT_03959___ 472 ----TTTTCTGATCTGTACGCGGTTGAAATGGAGGCTGCGGCAGTGGCTC 517
|||.|.||.||.||.|||||.||||||||.|||||.||.||.||.|
BPUM_2362___m 492 GAAGTTTCCAGAGCTATATGCGGTAGAAATGGAAGCTGCAGCTGTTGCAC 541
BSNT_03959___ 518 AAGTGTGCCATCAATTTAAAACGCCGTTTGTCGTCATCAGAGCATTATCT 567
||||.|||||.|..|||..||||||.|||||.|||.|..||||..|||||
BPUM_2362___m 542 AAGTTTGCCAGCTCTTTGGAACGCCATTTGTTGTCGTTCGAGCGCTATCT 591
BSNT_03959___ 568 GATATTGCAGGAAAAGAATCACATGTTTCATTTGACCAATTTTTAGAGCA 617
|||||||||||.||||||||..||||.||||||||.||||||.|.|||||
BPUM_2362___m 592 GATATTGCAGGGAAAGAATCCAATGTCTCATTTGATCAATTTCTTGAGCA 641
BSNT_03959___ 618 GGCGGCTGTCCATTCAACAGAGCTTGTGTTAAAGG----TGATCAAACGA 663
.||.||..|.||.|||||.||.|||||.|| | ||||.||.|.|
BPUM_2362___m 642 AGCAGCGATTCACTCAACCGACCTTGTCTT----GCGTATGATAAAGCAA 687
BSNT_03959___ 664 ATTCATTAA 672
|.|||.|||
BPUM_2362___m 688 ACTCAATAA 696
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