Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03959 and BPUM_2362

See Amino acid alignment / Visit BSNT_03959 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:26
# Commandline: needle
#    -asequence dna-align/BSNT_03959___mtn.1.24716.seq
#    -bsequence dna-align/BPUM_2362___mtnN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03959___mtn-BPUM_2362___mtnN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03959___mtn-BPUM_2362___mtnN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03959___mtn
# 2: BPUM_2362___mtnN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 709
# Identity:     511/709 (72.1%)
# Similarity:   511/709 (72.1%)
# Gaps:          50/709 ( 7.1%)
# Score: 1855.0
# 
#
#=======================================

BSNT_03959___      1 ------------------------ATGGAAGAGGAAGTTACCATCTTAAG     26
                                             ||||||||.|||||.||.||.|||||
BPUM_2362___m      1 TTGAAAATCGCTGTCATAGGTGCAATGGAAGAAGAAGTGACGATATTAAG     50

BSNT_03959___     27 AGACAAACTTGAAAATGCAAAAACAGAAACGATCGCACACTGTGAATTTA     76
                     |||..||||..|.|||||.|.|..|||||..|||||....||||||||.|
BPUM_2362___m     51 AGATCAACTAAAGAATGCTACACAAGAAAACATCGCTGGGTGTGAATTCA    100

BSNT_03959___     77 CAACAGGCGAATATGAAGGAACTGAAGTGATTCTTTTAAAATCAGGAATT    126
                     |||||||.|.||||||||..|..|||||||||.|.|||||||||||.|||
BPUM_2362___m    101 CAACAGGTGTATATGAAGATAAAGAAGTGATTTTATTAAAATCAGGGATT    150

BSNT_03959___    127 GGAAAAGTAAATGCTGCTATCAGCACGACGCTTCTGCTTGACCG-TTACA    175
                     ||||||||.|||||.||..|||||||.||.|||||||||||.|| ||.| 
BPUM_2362___m    151 GGAAAAGTGAATGCAGCGGTCAGCACAACACTTCTGCTTGATCGCTTTC-    199

BSNT_03959___    176 AGCCTGATTATGTCATTAACACAGGCTCAGCCGGCGGATTTCATCATACA    225
                     ||||.||||||||.||.||.|||||.|||||.|||||.||.|||||.|||
BPUM_2362___m    200 AGCCAGATTATGTGATCAATACAGGATCAGCTGGCGGTTTCCATCACACA    249

BSNT_03959___    226 TTGAATGTAGGGGATGTCGTCATTTCCACTGACGTTCGCCACCATGATGT    275
                     ||.||||||||||||.|.||.||.||.|||||||||.|.||.||||||||
BPUM_2362___m    250 TTAAATGTAGGGGATATTGTGATCTCTACTGACGTTAGACATCATGATGT    299

BSNT_03959___    276 AGACGTAACGGCTTTTGACTATGAATACGGCCAAGTGCCGGGTCTTCCGG    325
                     .||.||.|||...|||.|.||.||||||||.|||||.||.||..|.||.|
BPUM_2362___m    300 GGATGTCACGATCTTTAATTACGAATACGGACAAGTACCAGGATTGCCCG    349

BSNT_03959___    326 CTGCTTATGCGGCGGATGAAAAGC---TGATCAGCATCACTGAAGAAGCG    372
                     ||||||.||..||.||.|||||||   |||  ||| |..|.||.|||.||
BPUM_2362___m    350 CTGCTTTTGTTGCAGACGAAAAGCTTGTGA--AGC-TGGCAGAGGAATCG    396

BSNT_03959___    373 GTATCTGAACTCGACGGCATTCAGGTTGCAAAAGGAACGATTGCAACAGG    422
                     |..|..||..||||....|||||.||.||||||||||||||||||||.||
BPUM_2362___m    397 GCTTTAGAGATCGATCATATTCAAGTGGCAAAAGGAACGATTGCAACCGG    446

BSNT_03959___    423 CGATTCTTTCATGAACGATCCGAAGCGGGTTGAAGAG-GTGCGTGCGAGA    471
                     .|||||.||.|||||.||||||||.||.||     || ||..|||.||||
BPUM_2362___m    447 AGATTCATTTATGAATGATCCGAATCGTGT-----AGCGTTTGTGAGAGA    491

BSNT_03959___    472 ----TTTTCTGATCTGTACGCGGTTGAAATGGAGGCTGCGGCAGTGGCTC    517
                         |||.|.||.||.||.|||||.||||||||.|||||.||.||.||.|
BPUM_2362___m    492 GAAGTTTCCAGAGCTATATGCGGTAGAAATGGAAGCTGCAGCTGTTGCAC    541

BSNT_03959___    518 AAGTGTGCCATCAATTTAAAACGCCGTTTGTCGTCATCAGAGCATTATCT    567
                     ||||.|||||.|..|||..||||||.|||||.|||.|..||||..|||||
BPUM_2362___m    542 AAGTTTGCCAGCTCTTTGGAACGCCATTTGTTGTCGTTCGAGCGCTATCT    591

BSNT_03959___    568 GATATTGCAGGAAAAGAATCACATGTTTCATTTGACCAATTTTTAGAGCA    617
                     |||||||||||.||||||||..||||.||||||||.||||||.|.|||||
BPUM_2362___m    592 GATATTGCAGGGAAAGAATCCAATGTCTCATTTGATCAATTTCTTGAGCA    641

BSNT_03959___    618 GGCGGCTGTCCATTCAACAGAGCTTGTGTTAAAGG----TGATCAAACGA    663
                     .||.||..|.||.|||||.||.|||||.||    |    ||||.||.|.|
BPUM_2362___m    642 AGCAGCGATTCACTCAACCGACCTTGTCTT----GCGTATGATAAAGCAA    687

BSNT_03959___    664 ATTCATTAA    672
                     |.|||.|||
BPUM_2362___m    688 ACTCAATAA    696


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