Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03957 and BPUM_2360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_03957___yrhB.1.24716.seq
# -bsequence dna-align/BPUM_2360___yrhB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03957___yrhB-BPUM_2360___yrhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03957___yrhB-BPUM_2360___yrhB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03957___yrhB
# 2: BPUM_2360___yrhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1185
# Identity: 860/1185 (72.6%)
# Similarity: 860/1185 (72.6%)
# Gaps: 81/1185 ( 6.8%)
# Score: 3046.0
#
#
#=======================================
BSNT_03957___ 1 ATGAAGAAAAAAACTTTGATGATACATGGCGGAATCACAGGTGATGAGAA 50
|||||...||||||..||||||||||..||||||..||.||||||||.||
BPUM_2360___y 1 ATGAAACGAAAAACAATGATGATACACAGCGGAACAACGGGTGATGAAAA 50
BSNT_03957___ 51 AACAGGCGCAGTTTCCGTGCCCATTTATCAAGTAAGCACGTACAAGCAGC 100
|||.|||||.||.||.||.||.||.||.|||||.|||||.||.|||||||
BPUM_2360___y 51 AACGGGCGCTGTGTCTGTACCTATATACCAAGTGAGCACCTATAAGCAGC 100
BSNT_03957___ 101 CGAAAGCAGGACAGCATACAGGCTACGAGTATTCAAGAACGGCCAATCCG 150
||||||||||..|.||||||||.||.||.|||||||||||.||.||.||.
BPUM_2360___y 101 CGAAAGCAGGCGAACATACAGGGTATGAATATTCAAGAACAGCGAACCCA 150
BSNT_03957___ 151 ACTCGAACCGCTCTCGAA----GCACTTGTGACAGAACTGGAAAGCGGGG 196
||..||||.||.||.||| .||.|.||||| ||.||| ||.|
BPUM_2360___y 151 ACAAGAACGGCACTAGAAACCGCCATTCGTGAC----CTTGAA---GGAG 193
BSNT_03957___ 197 AAGCA---GGTTATGCGTTCAGTTCGGGAATGGCTGCCATTACAGCAGTT 243
.|||| ||.||.||.||..||||.|||||||||||||||||.|||||.
BPUM_2360___y 194 GAGCAAACGGCTACGCATTTGGTTCAGGAATGGCTGCCATTACGGCAGTG 243
BSNT_03957___ 244 ATGATGCTGTTTAACAGCGGAGATCATGTCGTGTTGACTGATGATGTGTA 293
|||||||||||||||||.|||||||||.|.||..||||.|||||.||.||
BPUM_2360___y 244 ATGATGCTGTTTAACAGTGGAGATCATATTGTCCTGACAGATGACGTTTA 293
BSNT_03957___ 294 CGGCGGAACATATCGCGTGATGACAAAGGTGCTTAACCGTCTTGGCATTG 343
|||||||||.||.|||||.||.||||||||.||.||.|||.|||.||||.
BPUM_2360___y 294 CGGCGGAACGTACCGCGTCATCACAAAGGTACTCAATCGTATTGACATTC 343
BSNT_03957___ 344 AATCAACATTTGTTGATACGA--------GCAGCAGGGAAGAAGTTGAAA 385
||.|.||.||||||||.||.| |.||||| |||||
BPUM_2360___y 344 AAGCGACCTTTGTTGACACAAGTGATCCTGAAGCAG---------TGAAA 384
BSNT_03957___ 386 AA-GCGATTCGCCCTAATACAAAAGCCATTTATATTGAAACACTGACAAA 434
|| ||||||...|||.|.||||||||..||||.||||||.|||..||.||
BPUM_2360___y 385 AAGGCGATTTTACCTGAAACAAAAGCGGTTTACATTGAATCACCAACCAA 434
BSNT_03957___ 435 TCCGTTGCTCAAAATCACCGACTTGACGCTCATGGCTGATATCG------ 478
|||.||.||||||||.||.||| ||||..||.| |||
BPUM_2360___y 435 TCCTTTACTCAAAATGACTGAC------CTCAAAGCAG---TCGGCCAAT 475
BSNT_03957___ 479 ---CAAAAAAAGCGGGTGTT--CTGCTT----ATCGTAGACAACACCTTT 519
|||||.|||| | |..||| ||.||.||.||.||.|||
BPUM_2360___y 476 TGACAAAAGAAGC------TAACATCTTAATGATTGTTGATAATACATTT 519
BSNT_03957___ 520 AATACTCCTTATTTTCAGCAACCGCTT-ACTTTAGGCGCTGATATCGTAC 568
...||.||||||||.||...||||.|| |.|.| ||.||.||.||.||.|
BPUM_2360___y 520 TTCACACCTTATTTCCAAAGACCGATTGAATAT-GGGGCAGACATTGTCC 568
BSNT_03957___ 569 TTCACAGTGCGACAAAATATCTTGGCGGACACAGTGATGTCGTCGGAGGT 618
|.||.|||||.||.||||||.|.||.||.||||||||.|||||.||.||.
BPUM_2360___y 569 TGCATAGTGCCACTAAATATTTAGGTGGTCACAGTGACGTCGTAGGTGGG 618
BSNT_03957___ 619 TTAGTTGTGACAGCTTCGAAAGAGCTTGGAGAAGAGCTGCATTTTGTGCA 668
.|.|||||.|||||..||.||||||||||.|||||.|||||||||||.||
BPUM_2360___y 619 CTTGTTGTAACAGCGACGGAAGAGCTTGGGGAAGAACTGCATTTTGTTCA 668
BSNT_03957___ 669 AAACTCCACAGGCGGCGTGCTCGGCCCTCAAGATTCCTGGCTGTTAATGA 718
|||.||.|||||.||..|.||.||.||.||.|||||.|||||..|.||||
BPUM_2360___y 669 AAATTCTACAGGTGGAATCCTTGGACCGCAGGATTCATGGCTTCTCATGA 718
BSNT_03957___ 719 GAGGAATCAAAACGTTGGGACTCAGAATGGAAGC-GATCGATCAAAATGC 767
|||||||||||||..|.|||||.||||||||||| .||| |.||||||||
BPUM_2360___y 719 GAGGAATCAAAACACTTGGACTAAGAATGGAAGCACATC-AGCAAAATGC 767
BSNT_03957___ 768 GCGGAAAATCGC-AAGCTTTCTTGAGAATCACCCTGCTGTCCAAACGT-T 815
.|.||||||||| .|| |||.|.||..|.||.||.||.|| ||.|||| |
BPUM_2360___y 768 ACAGAAAATCGCTGAG-TTTTTAGAACAACATCCAGCAGT-CACACGTGT 815
BSNT_03957___ 816 ATATTACCCTGGTTCTTCA-AATCATCCCGGACATGAGCTTGCAAAAACG 864
.||||||||.|| ||||.| ..|||||||||||||||.||||||||||||
BPUM_2360___y 816 TTATTACCCAGG-TCTTGATGCTCATCCCGGACATGAACTTGCAAAAACG 864
BSNT_03957___ 865 CAAGGATCGGGCTTTGGCGGCATGATCTCCTTTGATATTGGCAGTGAAGA 914
||||.|||.||||..|||||.||||||||.|||||||||||.|..|||||
BPUM_2360___y 865 CAAGCATCAGGCTACGGCGGTATGATCTCTTTTGATATTGGAAAAGAAGA 914
BSNT_03957___ 915 ACGGGTTGATGCGTTTTTAGGAAATCTGAAACTGTTTACCATTGCTGAAA 964
||..||.||||.|||||||.|..|.||.||.||||||||.||.||.||||
BPUM_2360___y 915 ACATGTCGATGTGTTTTTAAGTCAGCTTAAGCTGTTTACGATCGCAGAAA 964
BSNT_03957___ 965 GCCTGGGGGCGGTTGAAAGCTTAATTTCTGTTCCTGCAAGAATGACACAT 1014
||||.||.|||||||||||||||||||||||||||||..|||||||.|||
BPUM_2360___y 965 GCCTTGGAGCGGTTGAAAGCTTAATTTCTGTTCCTGCTCGAATGACTCAT 1014
BSNT_03957___ 1015 GCCTCTATTCCGAGAGAACGCCGGCTTGAGCTCGGCATTACGGACGGCTT 1064
||.||.|||||.|.|||.||.||....|||||.|||||.||.||.||.||
BPUM_2360___y 1015 GCGTCCATTCCAAAAGACCGTCGCGAGGAGCTTGGCATCACTGATGGGTT 1064
BSNT_03957___ 1065 GATCAGAATTTCTGTAGGAATTGAAGATGCGGAAGACTTGTTGGAAGATA 1114
.||..|.||.||.||.||.||||||||||.|||.||.||..||.|.||||
BPUM_2360___y 1065 AATTCGTATATCCGTCGGGATTGAAGATGTGGATGATTTACTGAATGATA 1114
BSNT_03957___ 1115 T------CGGCC---AAGCGCTTGAAAATATATAA 1140
| .||.| |.||.||.|..|||..|||.
BPUM_2360___y 1115 TGAAGCAGGGACTAAACGCACTAGTGAATGGATAG 1149
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