Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01070 and BPUM_2347
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:41
# Commandline: needle
# -asequence dna-align/BSNT_01070___ydjL.1.24716.seq
# -bsequence dna-align/BPUM_2347___ydjL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01070___ydjL-BPUM_2347___ydjL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01070___ydjL-BPUM_2347___ydjL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01070___ydjL
# 2: BPUM_2347___ydjL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity: 783/1051 (74.5%)
# Similarity: 783/1051 (74.5%)
# Gaps: 20/1051 ( 1.9%)
# Score: 2780.0
#
#
#=======================================
BSNT_01070___ 1 ATGAAGGCAGCAAGATGGCATAACCAAAAGGATATCCGTATTGAACATAT 50
|||||.|||..|.|.|||||..|.||||||||.||.||..|.||..|.||
BPUM_2347___y 1 ATGAAAGCACTACGCTGGCACGATCAAAAGGACATTCGACTAGAGGAAAT 50
BSNT_01070___ 51 CGAAGAGCCAAAAACGGAGCCGGGAAAAGTAAAGATCAAAGTCAAATGGT 100
.||.||.||||||...|..||.||||||||.||..|.|||||.|||||||
BPUM_2347___y 51 TGATGAACCAAAAGTTGCTCCAGGAAAAGTGAAACTTAAAGTGAAATGGT 100
BSNT_01070___ 101 GCGGCATCTGCGGAAGTGATTTACACGAATATCTGGGCGGCCCGATCTTT 150
|||||||.||.||.|||||||||||.||||||||.||.||.||.|||||.
BPUM_2347___y 101 GCGGCATTTGTGGTAGTGATTTACATGAATATCTAGGAGGACCTATCTTC 150
BSNT_01070___ 151 ATTCCGGTTGACAAACCGCACCCATTAACAAATGAAACGGCACCTGTCAC 200
|||||.||..|..||||.||.|||.|.|||||.||||..||||||.|.||
BPUM_2347___y 151 ATTCCAGTGAATGAACCTCATCCACTGACAAAAGAAAAAGCACCTATTAC 200
BSNT_01070___ 201 AATGGGGCATGAATTCTCCGGTGAAGTTGTCGAAGTCGGAGAAGGCGTTG 250
|.|||||||||||||.||.|||||.|||||.|||||.|||||||.|| ||
BPUM_2347___y 201 ACTGGGGCATGAATTTTCTGGTGAGGTTGTTGAAGTAGGAGAAGACG-TG 249
BSNT_01070___ 251 A-AAATTATAAAGTTGGAGACCGCGTTGTAGTCGAGCCGATTTTTGCTAC 299
| .|||||.|||||.||.|||||.||.||.||.||||||||||||||.||
BPUM_2347___y 250 AGCAATTACAAAGTAGGCGACCGAGTGGTTGTTGAGCCGATTTTTGCAAC 299
BSNT_01070___ 300 ACACGGCCACCAAGGCGCCTACAACCTTGATGAACAAATGGGATTCCTCG 349
.|||||.||.|||||.||.||||||.|.||||||.|.|||||.||..|.|
BPUM_2347___y 300 TCACGGACATCAAGGTGCTTACAACTTAGATGAAAATATGGGCTTTTTAG 349
BSNT_01070___ 350 G-CTTAGCCGGCGGAGGCGGCGGTTTCTCTGAATACGTCTCTGTGGATGA 398
| ||| |||||.||.|||||.||.|||||||||||.||.|||||.|||||
BPUM_2347___y 350 GACTT-GCCGGAGGCGGCGGTGGATTCTCTGAATATGTATCTGTCGATGA 398
BSNT_01070___ 399 AGAGCTTTTGTTCA--AACTTCCTGATGAATTATCATATGAACAAGGCGC 446
||| .||..|||| .|.|.||.||.|||.|.||||||||.|||||.||
BPUM_2347___y 399 AGA--ATTACTTCATTTATTACCAGACGAAATTTCATATGAGCAAGGGGC 446
BSNT_01070___ 447 GCTCGTTGAACCTTCTGCAGTTGCTCTATACGCTGTCCGCTCAAGCAAAC 496
.||.||.||.|||||.||||||||||||||.||.||.||.||.||.|||.
BPUM_2347___y 447 ACTTGTAGAGCCTTCAGCAGTTGCTCTATATGCAGTTCGTTCTAGTAAAG 496
BSNT_01070___ 497 TCAAAGCAGGCGACAAAGCAGCTGTATTCGGCTGCGGCCCGATCGGACTT 546
|..||||.|||||.|.|||.|||||.||.||.|||||.||.||.|| |||
BPUM_2347___y 497 TACAAGCTGGCGATACAGCGGCTGTGTTTGGATGCGGACCAATTGG-CTT 545
BSNT_01070___ 547 -CTTGTCATTGAAGCGCTGAAGGCTGCCGGTGCAACTGATATTTACGCTG 595
|||||.||||||||..|.||.||.||.|||||.||||||||||||||.|
BPUM_2347___y 546 ACTTGTTATTGAAGCATTAAAAGCAGCTGGTGCTACTGATATTTACGCGG 595
BSNT_01070___ 596 TTGAGCTTTCTCCTGAACGCCAGCAAAAAGCTGAGGAGCTTGGCGCGATC 645
|.||..|.|||...||||||||..|||||||..|.||||||||.||||||
BPUM_2347___y 596 TAGAATTATCTAAAGAACGCCAAGAAAAAGCGAAAGAGCTTGGAGCGATC 645
BSNT_01070___ 646 ATCGTAGATCCGTCTAAAACAGACGATGTAGTCGCTGAGATTGCAGAACG 695
||.||.|||||.|||.||...||.|||||.||....||.||||||...||
BPUM_2347___y 646 ATTGTTGATCCTTCTCAATATGAAGATGTTGTTCAAGAAATTGCACGCCG 695
BSNT_01070___ 696 TACAGGAGGCGGTGTTGACGTAGCATTCGAAGTCACTGGTGTCCCAGTGG 745
||||...||.||.||.||.||..|.||.|||||.||.|||||.||.||.|
BPUM_2347___y 696 TACAAATGGTGGCGTCGATGTTTCTTTTGAAGTGACAGGTGTACCTGTTG 745
BSNT_01070___ 746 TGTTACGA--CAAGCCATCCAGTCCACTACAATTGCCGGTGAAACCGTCA 793
|.|| || |||||.|||||.||.||||.||||.|.||||||||.||||
BPUM_2347___y 746 TATT--GAAGCAAGCAATCCAATCAACTAGAATTTCAGGTGAAACAGTCA 793
BSNT_01070___ 794 TCGTCAGCATTTGGGAAAAAGGTGCTGAAATCCATCCGAACGATATCGTA 843
|.||.||.||||||||||||||.||.|||||.|..||.||.||.||.||.
BPUM_2347___y 794 TTGTAAGTATTTGGGAAAAAGGCGCAGAAATTCTGCCAAATGACATTGTC 843
BSNT_01070___ 844 ATCAAAGAACGTACAGTAAAAGGAATTATCGGATACCGCGACATCTTCCC 893
||.||||||||||||||.||||||||||||||.|||.|.|||.|.|||||
BPUM_2347___y 844 ATTAAAGAACGTACAGTCAAAGGAATTATCGGCTACAGAGACGTATTCCC 893
BSNT_01070___ 894 GGCTGTATTGTCATTAATGAAAGAAGGCTATTTCTCAGCTGACAAACTCG 943
..|||||||....|||||||.|.||||.||||||||.||.||.|..||||
BPUM_2347___y 894 ATCTGTATTAAACTTAATGAGAAAAGGATATTTCTCTGCAGATACGCTCG 943
BSNT_01070___ 944 TAACGAAAAAAATC--GTACTAGATGATTTGATCGAGGAAGGCTTCGGGG 991
|.|||||.|||||| || |.||.|||.|.|||||.||.||.|||...|
BPUM_2347___y 944 TCACGAAGAAAATCAAGT--TGGACGATGTAATCGAAGATGGTTTCCATG 991
BSNT_01070___ 992 CTCTTATTAAAGAGAAAAG-CCAAGTCAAAATCCTTGTCAGACCTAACTA 1040
||.|.||.||.|| ||||| .|||||.|||||..|.||.||..||.|.||
BPUM_2347___y 992 CTTTAATCAATGA-AAAAGATCAAGTGAAAATTTTAGTTAGTGCTGAATA 1040
BSNT_01070___ 1041 A 1041
|
BPUM_2347___y 1041 A 1041
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