Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06018 and BPUM_2336
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:32
# Commandline: needle
# -asequence dna-align/BSNT_06018.1.24716.seq
# -bsequence dna-align/BPUM_2336___yxiJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06018-BPUM_2336___yxiJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06018-BPUM_2336___yxiJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06018
# 2: BPUM_2336___yxiJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 416
# Identity: 225/416 (54.1%)
# Similarity: 225/416 (54.1%)
# Gaps: 124/416 (29.8%)
# Score: 506.0
#
#
#=======================================
BSNT_06018 1 ATGAA-ATTTTTTAA---AAGATATAA---TATTGATCAAAAAACATTAG 43
||||| | |.| ||||||.|| .|||.||| ||..|||.|
BPUM_2336___y 1 ATGAACA-----TCAGCCAAGATAAAAAAGAATTAATC---AATGATTTG 42
BSNT_06018 44 ATG-AGTTCAAAAAATATTATGTATTATTACATGGTCCG--TTTCCAAAT 90
|.| ||..|.|..||||||.| ||.||| |||| |.||||.|.
BPUM_2336___y 43 AAGCAGCGCTATCAATATTGT------TTTCAT--TCCGCTTATCCAGAA 84
BSNT_06018 91 GATAT-GTATGATTTTGAAGAAGAAACAAATACTTCT--TTAGATGAATT 137
||||| |||| .||||||.||.|||||...|| ||| |..|||||.||
BPUM_2336___y 85 GATATCGTAT-TTTTTGAGGAGGAAACTGGTA--TCTGGTCCGATGATTT 131
BSNT_06018 138 TTATGAATTTTTTGC-CTTAATAACTGGAAGTTTAAATTATATAATTGAA 186
||||||||||||..| ||| .|.||.||.||.||||.||||.|.||.||.
BPUM_2336___y 132 TTATGAATTTTTCACTCTT-GTGACAGGCAGCTTAAGTTATGTGATCGAT 180
BSNT_06018 187 GATAAAAAAATTCCTAGATATCAAAGAGAAA-TGTTAAAAAAAACGTTCT 235
.|||||..|||.|| |||| ||| .||| ||||||.||
BPUM_2336___y 181 CATAAACGAATACC-------CAAA---AAACAGTT-----AAACGTGCT 215
BSNT_06018 236 --------------ATGAACATTATCCTCA----------TTTTA----- 256
|.||.||.||.||||| |||.|
BPUM_2336___y 216 GCGTCAGTCATTTGAAGAGCAATACCCTCAAATCAAATCGTTTCAACACA 265
BSNT_06018 257 ----GGAATTATAAAAGTGATATTTTAAA-----ATATCAAGAATTAAGT 297
.||||..|| |..|.|.|||.| |||||.||.|..| |
BPUM_2336___y 266 TCCTTGAATCGTA----TCCTTTATTACATTCCTATATCCAGTACCA--T 309
BSNT_06018 298 GAATGCTTAGAATTTCATGAAAA--AATTAGGATTTTG-ATTAATAAGCT 344
|| |||| .||.||||| |||.| ||| |||.||||
BPUM_2336___y 310 GA------AGAA--ACAAGAAAACGAATCA-----TTGCATTTATAA--- 343
BSNT_06018 345 TATAACAGGAGGATGA 360
.||||
BPUM_2336___y 344 AATAA----------- 348
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