Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00613 and BPUM_2332
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:24
# Commandline: needle
# -asequence dna-align/BSNT_00613___hxlB.1.24716.seq
# -bsequence dna-align/BPUM_2332___hxlB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00613___hxlB-BPUM_2332___hxlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00613___hxlB-BPUM_2332___hxlB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00613___hxlB
# 2: BPUM_2332___hxlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 627
# Identity: 365/627 (58.2%)
# Similarity: 365/627 (58.2%)
# Gaps: 138/627 (22.0%)
# Score: 937.0
#
#
#=======================================
BSNT_00613___ 1 ATGAAAACGACTGAATACGTAGCGGAA----ATTCTCAATGAGTTACACA 46
|||||.||.|.|||.||.|| ||| |||.|.||||||.|
BPUM_2332___h 1 ATGAAGACCAGTGACTATGT----GAAAGCCATTTTAAATGAGCT----- 41
BSNT_00613___ 47 ATTC--AGCAGCT-----TATATTTCTA-ATGAAGAGGCTGACCAGCTTG 88
||| |||| || .||| |||.| |.|||.|.||.||.|.|||||
BPUM_2332___h 42 -TTCTGAGCA-CTCGCCGGATA-TTCAAGACGAACAAGCAGAGCGGCTTG 88
BSNT_00613___ 89 CCGATCA--CATT----CTGTCATCCCACCAAA----TTT---TCACCGC 125
.| ||| |||| ||| ||..||| ||| |||
BPUM_2332___h 89 TC--TCAAGCATTTTCACTG------CAAGAAAGGTCTTTGTGTCA---- 126
BSNT_00613___ 126 GGGTGCGGGTCGGTCTGGCCTGATGGCAAAATCCTTCGCGATGAGACTGA 175
||.||.||..|||||||..||||||.||||||.||.||.||||||||.|
BPUM_2332___h 127 -GGGGCTGGCAGGTCTGGTTTGATGGGAAAATCATTTGCCATGAGACTCA 175
BSNT_00613___ 176 TGCACATGGGCTTCAACGCCCATATAGTAGGTGAGATTCTC----ACTCC 221
..||.||.|||.||||.||..||.|..|.|||||.| | ||.||
BPUM_2332___h 176 CACATATTGGCGTCAAGGCATATGTGATCGGTGAAA----CCAATACACC 221
BSNT_00613___ 222 GCCGCTCGCCGAAGGAGATCTAGTTATTATCGGCTCAGGATCAGGCGAGA 271
..|..|..|.||||.||||.|..|.|||.|.||....|||||.|||...|
BPUM_2332___h 222 TTCCTTTACAGAAGAAGATATCTTAATTGTTGGGAGCGGATCTGGCCGTA 271
BSNT_00613___ 272 CAAAGA----GCTTGATTCATACCGCAGCAAAAGCAAAAAGCTTACACGG 317
||.||| ||||| ||.| .|||..|||||||||| |.
BPUM_2332___h 272 CAGAGACTTTGCTTG--TCCT--TGCAAAAAAAGCAAAA---------GC 308
BSNT_00613___ 318 AATT---------GTTGCCGCTTTAAC----------CA-TCAATCCGGA 347
|||| ||.||.|||||.|| || ||| ||
BPUM_2332___h 309 AATTGGTGGAAAAGTGGCAGCTTTTACGCTTTCTGCTCAGTCA--CC--- 353
BSNT_00613___ 348 ATCAAGC------GTCGGAAAACAAGCGGACCTCATCATCAGAATGCCTG 391
||.||| .|||| |..||| |||||..|.||.|.|
BPUM_2332___h 354 -TCTAGCTGATCTATCGG--ATGAAG---------TCATCTTACTGTCAG 391
BSNT_00613___ 392 GTTCTCCTAAAGACCCGTCAAAC-----GGAAGCTATAAAACCATTCAGC 436
||.|.||.||.||.| ||| ||||||.||.|.||||||||||
BPUM_2332___h 392 GTGCGCCGAAGGATC-----AACAGGGGGGAAGCCATGATACCATTCAGC 436
BSNT_00613___ 437 CAATGGGATCATTATTTGAACAAACTTTGCTGCTATTC-----TATGATG 481
|||||||.||..|||||||.|| .|.||| |.||| ||.||||
BPUM_2332___h 437 CAATGGGTTCGCTATTTGAGCA---GTCGCT--TCTTCTGACATACGATG 481
BSNT_00613___ 482 CAGTGATTTTAAAACTCATGGAGAAAAAAGGACTCGATTCTGAAACTATG 531
|.||.||||||...||.|||||.|..||||..|||||..|..|.||.|||
BPUM_2332___h 482 CGGTCATTTTACGGCTAATGGAAATGAAAGAGCTCGACACACATACAATG 531
BSNT_00613___ 532 TTCACTCACCACGCAAACCTTGAATAG 558
|.|..||||||.|||||..|.||||||
BPUM_2332___h 532 TACGGTCACCATGCAAATTTAGAATAG 558
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