Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05137 and BPUM_2326
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_05137___araE.1.24716.seq
# -bsequence dna-align/BPUM_2326.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05137___araE-BPUM_2326.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05137___araE-BPUM_2326.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05137___araE
# 2: BPUM_2326
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1673
# Identity: 800/1673 (47.8%)
# Similarity: 800/1673 (47.8%)
# Gaps: 610/1673 (36.5%)
# Score: 1506.5
#
#
#=======================================
BSNT_05137___ 1 ATGAAGAATACTCCAACTCAATT--AGAACCAAATGT-TCCTGTAACACG 47
|| |||| |||.|| ||
BPUM_2326 1 ---------------------TTGGAGAA--AAAAGTGTC---------- 17
BSNT_05137___ 48 AAGCCATTCTATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGC--T 95
||||.|.|.|| ||.||.|||| ||||.| |
BPUM_2326 18 AAGCAAATTTA------TTTTCTTTTT--------------CGGGTCCTT 47
BSNT_05137___ 96 TGGCGGCTTATTGTATGGCTATGACA-CGGCAGTGATTTCTGGCGCCATC 144
||..|||.|.||.|..||.|||||.| .||.| |.|||.|.|| |.||..
BPUM_2326 48 TGCAGGCATCTTATTCGGATATGATATTGGGA-TTATTGCAGG-GGCAGA 95
BSNT_05137___ 145 GG----TTTTCTGAAAG-ATTTATACAGCCTGAGTCCGTTTATGG-AGGG 188
|| |.|||.|.||| |||| ||| ||.|| ||..|||||| ..||
BPUM_2326 96 GGGACATATTCAGCAAGAATTT---CAG-CTCAG-CCCATTATGGCTTGG 140
BSNT_05137___ 189 ACTTGTCATTTCAAGCATTATGATTGGAGGAGTTGTTGGCG----TCGGG 234
|.|||||.|.|| ..||||| ||.||.|| |||| ||||
BPUM_2326 141 AATTGTCGTCTC-TTCATTA--ATGGGCGG-------GGCGATTATCGG- 179
BSNT_05137___ 235 ATATCCGGATTT-----------TTAAGTGACAGATTCGGCCGGAGAAA- 272
.||| |||| |||.|.||.|.|||.|||||||||||
BPUM_2326 180 --CTCC--ATTTTAAGCGGTCTGTTAGGGGATAAATTTGGCCGGAGAAAG 225
BSNT_05137___ 273 --AATTTTAATGACAGCCGCTTTGTTATTT------GCGAT---ATCAGC 311
.|||||..|..||.|||.|.|.||.||| ||||| ||||||
BPUM_2326 226 CTTATTTTGGTCTCATCCGTTATCTTTTTTGTCGGAGCGATCGGATCAGC 275
BSNT_05137___ 312 AATCGTTTCAGCGCTTTCTCAAGACGTGTCCACCTTAATCATTGCAAGGA 361
.||||...||| ||||..|.| |.||||.|||||||.|.|
BPUM_2326 276 TATCGCACCAG---------AAGAGATTT---CATTAACCATTGCACGTA 313
BSNT_05137___ 362 --TTATCGGGGGGCTGGGAA------TCGGGATGGGCTCATCGCTCTCTG 403
||.| |.|||| |.||.|..|.|||| |||.||
BPUM_2326 314 TCTTTT--------TAGGAACAGCCGTTGGTACAGCCTCA----TCTTTG 351
BSNT_05137___ 404 TT----ACGTATATTACAGAAGCGGCACC-GCCAGCCATACGCGGAAGTT 448
.| .|.||.||..|.|||...||.|| ||.| ..||.|||||.|..|
BPUM_2326 352 GTGCCGGCATACATGTCTGAAATTGCTCCTGCTA-AAATTCGCGGGAAAT 400
BSNT_05137___ 449 TATCT----TCCTTATATCAGCTCTTTACGATACTGGG-----TATTTCC 489
|.||| || .|||||||| |.|||..||.| ||||.|
BPUM_2326 401 TGTCTGGGCTC----AATCAGCTC---ATGATCGTGAGCGGACTATTGC- 442
BSNT_05137___ 490 GCAACATACTTTATTAA--TCTAGCTGTGCA---GCGGTCCGGAACATAC 534
||| |.||.|..|||| |.|.| .||||.||
BPUM_2326 443 --------------TAAGCTATATCGTTGCATTTGTGTT--TGAACCTA- 475
BSNT_05137___ 535 GAATGGGGCGTGCACACCGGCTGGAGATGGATGCTTGCTTATGGAATGGT 584
.|.||.| |.|||||.|.||||||||.| .|.|.
BPUM_2326 476 ---------TTCCAGA-CAGCTGGCGCTGGATGCTCG--------GTAGC 507
BSNT_05137___ 585 GCCGTCCGTCATCTT--TTTCCT----TGTCCTTCTCGTCG--------- 619
|||| ||| |||.|| || |.||.|..|.|
BPUM_2326 508 GCCG--------CTTTATTTGCTATCGTG-CTTTATATTGGGATGCTGAA 548
BSNT_05137___ 620 --TTCCGGAAAGTCCGAG-------ATGGCTGGCGAAAGCGGGCAAAACA 660
||||.|||..|||||| || .|||||
BPUM_2326 549 GCTTCCTGAATCTCCGAGGTATTTAAT-----------------TAAACA 581
BSNT_05137___ 661 ---AATGAAGCTTTAAAGATCCTGACAC-----GTATTA----------- 691
||||..|| .||||| ||| ||||||
BPUM_2326 582 CGGAATGGCGC-ATAAAG-------CACGGGAAGTATTAGGGTCACTGCG 623
BSNT_05137___ 692 --------ATGGAGAAACTGTTGCAAAAGAAGA-ATTAAAGAACATTGAG 732
.||.|||||.|| ||||||| ||..|.|||..||.||
BPUM_2326 624 CTCTTCTCGTGAAGAAATTG------AAGAAGAGATGCAGGAAATTTTAG 667
BSNT_05137___ 733 AACTCATTAAAAATAGAACAAATGGGGTCGCTCTCCCAGCTGTTTAAGCC 782
||.||...|| ||||.|| |||||| |.|.|| |
BPUM_2326 668 AAGTCGCGAA----AGAAGAA-------CGCTCT----GGTATT-----C 697
BSNT_05137___ 783 G------GGTC----------TCAGAAAGGCGCTTGTCATTGGAATCCTG 816
| |.|| ||||||.|||.|||.||||.||..|...|
BPUM_2326 698 GCGAATTGTTCCAAAAGAAATTCAGAATGGCTCTTTTCATAGGGGTTGGG 747
BSNT_05137___ 817 CTGGCG-CTGTTTAACCAAGTC-ATCGGCATGAACGCGATTACTTACTAT 864
.||||| |..||.|.|.||.|| |..||| ||||.|.|||...||||||
BPUM_2326 748 ATGGCGACCCTTCAGCAAATTCAAGGGGC--GAACTCCATTGTGTACTAT 795
BSNT_05137___ 865 G------GTCCGGAAATCTTTAAAATGATGGGATTCGGGCA----AA--- 901
| || |.|..|..|||||..|||.|| ||| ||
BPUM_2326 796 GCAACAAGT-----ATTGCTCGAAATGTAGGGCTT---GCACCTCAAGTT 837
BSNT_05137___ 902 -ACGCTGGATTT---GTGACGACTTGTATCGTCGGGGTTGTAGAAGTCAT 947
.|||.||.||| |||| ||||.|..|||||
BPUM_2326 838 GCCGCAGGTTTTACAGTGA------------------TTGTCGGTGTCAT 869
BSNT_05137___ 948 CTTTACCGTTATTGCGGTGTTGCTGATTGATAA--AGTCGGACGAAAAAA 995
.|||..|||.|...|.|||.|..| ||.|.|| .||||
BPUM_2326 870 TTTTGTCGTCACCACCGTGATCTT--TTTACAATTTGTCG---------- 907
BSNT_05137___ 996 ACTGAT------GTCCATCGGTTCT-----------------GCTTTTAT 1022
||.||| |.|.|.||.|||| || ||
BPUM_2326 908 ACCGATTCGACCGCCGAACGATTCTCACCGTAGGGGGAACGGGC----AT 953
BSNT_05137___ 1023 GGCTATTTTTATGATT------------TTAATCGGG---AC--GTCGTT 1055
|||..|||.|.|..|| ||| || || |.||||
BPUM_2326 954 GGCCCTTTCTTTCTTTGCACCAGCTGCATTA----GGTGCACTTGGCGTT 999
BSNT_05137___ 1056 -------TTATTTTGAGTTAACAAGC-GGGATCATGATGATCGTCCTTAT 1097
.|||||| ||.| ||| ||| |||||.
BPUM_2326 1000 AGTGAAGGTATTTT--------AAACTGGG-------TGA----CCTTAA 1030
BSNT_05137___ 1098 ATTAGGTTTTGTCGCTGCTTT---CTGTG--------TCTC--GGTCGGA 1134
.||...||| |||||||| .|||| |||| || |.|
BPUM_2326 1031 TTTCACTTT----GCTGCTTTATCTTGTGCTACGCCTTCTCATGG--GCA 1074
BSNT_05137___ 1135 CCGATCACATGGATTATGATTTCTGAAATCTTCCCGAACCATCTGCGTGC 1184
||||||||.|||||.||.||....|||||.|||||| |..||| ||..
BPUM_2326 1075 CCGATCACGTGGATCATCATCGGCGAAATTTTCCCG--CTTTCT--GTCA 1120
BSNT_05137___ 1185 GCGG----GCCGCGGGCATTGCGACCATCT---TTTTATGGGGAGCAAAC 1227
|.|| |.|||.||.||| .||||| ||| |||
BPUM_2326 1121 GAGGTATCGGCGCAGGTATT----TCATCTGCCTTT-----------AAC 1155
BSNT_05137___ 1228 TGG--GCGATC----------GGACAGTTTGTG---CCAAT----GATGA 1258
||| |.|||| |||| |.||| ||.|| |..||
BPUM_2326 1156 TGGACGGGATCGTTAGCCGTTGGAC---TCGTGTTCCCTATCCTGGCAGA 1202
BSNT_05137___ 1259 TCGATTC--TTTCGGG------CTCGCCTATACATTTTGGATC-TTTGCG 1299
...|||| .|||||| .||.||| |||||.|..|| |.|||
BPUM_2326 1203 CAAATTCAGCTTCGGGGTCATTTTCTCCT---CATTTGGTGTCATCTGC- 1248
BSNT_05137___ 1300 GTGATTAACATC---CTTTGTTT--CCTGTTTGTCGTTACGATCTGTCC- 1343
||| ||| ||||..|| ||.|||| |||.|
BPUM_2326 1249 ----TTA--ATCGGACTTTTATTCACCCGTTT------------TGTGCT 1280
BSNT_05137___ 1344 ---GGAAACGA-------------AGAACAAATCGCTCGAGGAAATTGAA 1377
.|||||.| |||||||||| ||||..||.
BPUM_2326 1281 AGTTGAAACAAAAGGAAGAAGCTTAGAACAAATC-------GAAACCGAT 1323
BSNT_05137___ 1378 A----AGC-TTTGGATAAAATGA 1395
| ||| ..||.||||
BPUM_2326 1324 ATGGCAGCACGTGTATAA----- 1341
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