Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03813 and BPUM_2295
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:22
# Commandline: needle
# -asequence dna-align/BSNT_03813___yqeM.1.24716.seq
# -bsequence dna-align/BPUM_2295___yqeM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03813___yqeM-BPUM_2295___yqeM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03813___yqeM-BPUM_2295___yqeM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03813___yqeM
# 2: BPUM_2295___yqeM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 798
# Identity: 522/798 (65.4%)
# Similarity: 522/798 (65.4%)
# Gaps: 108/798 (13.5%)
# Score: 1608.5
#
#
#=======================================
BSNT_03813___ 1 ATGATTTATCAAGGCTTTGCAAGTGTGTATGACGAGTTAATGTCACACGC 50
||||||||||||||.||||||.||||||||||||||.|.|||.||||.||
BPUM_2295___y 1 ATGATTTATCAAGGGTTTGCAGGTGTGTATGACGAGCTCATGACACATGC 50
BSNT_03813___ 51 GCCTTACGATCAATGGACAAATTGGAT--TGAAGCATCTCTCCCGGAAA- 97
.|||||.|||.|||||....|.||||| .|.||.||.|| |||
BPUM_2295___y 51 ACCTTATGATGAATGGGTTCAGTGGATCCAGCAGAATGTC------AAAC 94
BSNT_03813___ 98 --AAGGCCG-TATTCTCGAT-CTGGCATGCGGCACGGGGGAAATCTCCAT 143
||.||.| ||||.|.||| .|||| ||.||.||.||.||.||.||..|
BPUM_2295___y 95 CGAATGCTGCTATTATTGATGTTGGC-TGTGGAACTGGAGAGATTTCTCT 143
BSNT_03813___ 144 CCGGCTTGCCGAAAAAGGCTTCGAGGTTACAGGCATCGATCTCAGCGAAG 193
.|||.|.||.||||||||...||..||.|||||.||.||.|||||.||||
BPUM_2295___y 144 TCGGTTAGCTGAAAAAGGTCACGCAGTCACAGGAATTGACCTCAGTGAAG 193
BSNT_03813___ 194 AGATGCTTTCTTTCGCCCAGCAAAAGGTA---TCGAGTAGCCAGCCTATT 240
|.|||||..|||||||.||||||||.|.| .|||..|..|||.|.|||
BPUM_2295___y 194 AAATGCTGGCTTTCGCGCAGCAAAAAGCACAGGCGAAAAAGCAGTCCATT 243
BSNT_03813___ 241 TTATTTCTTCAGCAGGATATGAGAGAGATTACCGGCTTTGATG---GTCA 287
..||||.|.||.||.||||||||||||.|.||.||.||||| | |||
BPUM_2295___y 244 CAATTTTTACATCAAGATATGAGAGAGCTGACGGGTTTTGA-GCAAGTC- 291
BSNT_03813___ 288 GTTTGACGCTGTTGTGATATGCTGTGACTCATTAAATTATTTAAAAACAA 337
|||.|.||.|..||.|||||||||||.||.||.|||||.|||||||...
BPUM_2295___y 292 -TTTCAAGCAGCGGTTATATGCTGTGATTCCTTGAATTACTTAAAAAACG 340
BSNT_03813___ 338 AAAATGATGTGATCGAAACCTTTAACAGTGTTTTTCGGGTATTAAAGTCT 387
|||||||.||.|...||||||||||.|...|.||||||.|.|||.||.|.
BPUM_2295___y 341 AAAATGACGTCAAAAAAACCTTTAAAAACATGTTTCGGCTTTTAGAGGCA 390
BSNT_03813___ 388 GAAGGCATACTGCTGTTTGATGTTCATTCATCTTTTAAAATTGCGGAAG- 436
||.|||.|..|.||.||||||||||||.|..|||.|||||| |||||
BPUM_2295___y 391 GATGGCGTTTTACTCTTTGATGTTCATACTCCTTATAAAAT---GGAAGA 437
BSNT_03813___ 437 --TCTTTCC-GGATAGCACATTTGCTGACCAGGACGAAGATATCAGCTAT 483
|.||.|| ||.|.| ||.|.|||.||.||.|..|||||.|||||||||
BPUM_2295___y 438 GATATTCCCAGGTTCG-ACTTATGCCGATCAAGGTGAAGAGATCAGCTAT 486
BSNT_03813___ 484 ATTTGGCAGAGCTTTG-----CCGGAAGTGACGAGCTTTCTGTCATTCAT 528
||||||||||| || ..||| ||||..|..|||.||||||||.
BPUM_2295___y 487 ATTTGGCAGAG---TGATAAAGGGGA--TGACATGTATTCAGTCATTCAC 531
BSNT_03813___ 529 GATATGTCGTTTTTTGTGTGGAACGGAGAAGCGTATGATCGTTTTGATGA 578
|||.|....||||||||...|.|||||||.|.||||.|.||||.||||||
BPUM_2295___y 532 GATTTAAGCTTTTTTGTAAAGGACGGAGATGTGTATCAGCGTTATGATGA 581
BSNT_03813___ 579 GACACACGAGCAAAGAACGTTCCCGGTGGAAGAATACGAAGAAATGCTTA 628
||||||.||.||..|.||.||.|| || ||.
BPUM_2295___y 582 GACACATGAACAGCGTACATTTCC-------------------AT--TTG 610
BSNT_03813___ 629 AGAAC--TGCGGCTTTCAGCT------CCATCGC---------------G 655
|||.| ||||||.||| || |..|.|| |
BPUM_2295___y 611 AGACCTATGCGGCGTTC--CTTGTGTCCGCTGGCTTTGAACAAATAGAAG 658
BSNT_03813___ 656 TGACAGCTGATTTTACGGAT------ACCGAGCCATCAGCACAATCAGAA 699
||||.|||||||||||..|| .|||.|..||..||..|| |||
BPUM_2295___y 659 TGACCGCTGATTTTACAAATGAAGCGCCCGGGGAATTCGCCGAA--AGA- 705
BSNT_03813___ 700 CGCCTCTT---TTTCAAGGCGCAGAAATCAAAAACCATCGTTTCCTAA 744
|.|| ||||| ||..|||||.|||||||||||||| |||
BPUM_2295___y 706 ----TATTTCATTTCA--GCTAAGAAACCAAAAACCATCGTT---TAA 744
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