Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03810 and BPUM_2292

See Amino acid alignment / Visit BSNT_03810 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_03810___comEB.1.24716.seq
#    -bsequence dna-align/BPUM_2292___comEB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03810___comEB-BPUM_2292___comEB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03810___comEB-BPUM_2292___comEB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03810___comEB
# 2: BPUM_2292___comEB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity:     415/595 (69.7%)
# Similarity:   415/595 (69.7%)
# Gaps:          50/595 ( 8.4%)
# Score: 1368.5
# 
#
#=======================================

BSNT_03810___      1 GTGGAACGAATTTCATGGAATCAATACTTTATGGCTCAAAGCCATTTATT     50
                     ||||||.|||||||||||||||||||.||||||||.||||||||||||.|
BPUM_2292___c      1 GTGGAAAGAATTTCATGGAATCAATATTTTATGGCACAAAGCCATTTACT     50

BSNT_03810___     51 GGCGCTGCGCAGCACATGTCCGAGATTATCTGTCGGCGCTACTATAGTCA    100
                     .||..|.||.|||||.|||..|.|.|||.||||.||.||.||.||.||||
BPUM_2292___c     51 TGCTTTACGAAGCACCTGTGAGCGGTTAGCTGTTGGGGCGACCATCGTCA    100

BSNT_03810___    101 GAGACAAACGCATGATAGCAGGAGGCTACAATGGGTCAATCGCGGGCGGC    150
                     |||||||.||.||.||.|||||.||.||.|||||.|||||.||.||.|..
BPUM_2292___c    101 GAGACAAGCGTATCATTGCAGGGGGATATAATGGCTCAATTGCTGGTGAT    150

BSNT_03810___    151 GTACATTGTGCAGATGAAGGATGCTTAATG--ATAGATGATCATTG----    194
                     ||.|||||||||||||..|||||||  |||  ||.|||.||||.||    
BPUM_2292___c    151 GTCCATTGTGCAGATGTGGGATGCT--ATGTCATTGATCATCACTGCGTT    198

BSNT_03810___    195 CGCAAGAACCATTCACGCTGAAATGAATGCGATTCTTCAATGCTCTAAGT    244
                     ||||.||.||||    ||.||||||||.||.|||.|.|||||..|.||.|
BPUM_2292___c    199 CGCACGATCCAT----GCGGAAATGAACGCTATTTTACAATGTGCCAAAT    244

BSNT_03810___    245 TTGGGGTGCCGACTGATGGAGCCGAGATTTATGTGACGCATTATCCGTGC    294
                     ||||.|..||.||.|..|..||.||.||.|||||.|||||||.|||.||.
BPUM_2292___c    245 TTGGTGCACCTACAGCCGATGCTGAAATATATGTCACGCATTTTCCTTGT    294

BSNT_03810___    295 ATTCAATGCTGCAAATCTATTATTCAAGCGGGTATCAAAACGGTTTATTA    344
                     .|.||.|||||.|||.|||||||.|||||.||.||...|||.||.||.||
BPUM_2292___c    295 TTGCAGTGCTGTAAAGCTATTATCCAAGCAGGCATTCGAACCGTATACTA    344

BSNT_03810___    345 TGCTGAGGATTACAAAACACATCCATATGCGCA-GGAATTATTTGAACAG    393
                     |||..|||||||.||||..||.||.||.|| || .||.||||||||.||.
BPUM_2292___c    345 TGCAAAGGATTATAAAAATCACCCCTACGC-CATTGATTTATTTGAGCAA    393

BSNT_03810___    394 GCGGGTGT---AACAGTTGAACAGGTTGAACTCGATGAAATGATCGTTGA    440
                     ||.|||||   |||   .|||||.||.||||||||||||||||||.|.||
BPUM_2292___c    394 GCAGGTGTTCAAAC---GGAACAAGTCGAACTCGATGAAATGATCATCGA    440

BSNT_03810___    441 TCTGAAAAA-CAGGGAAAAGCTTT--CATTTGTAGCGGGTCTTATAGGGA    487
                     ..||||||| ||.|.||||   ||  |.|||||.||.|.|.|.||.||.|
BPUM_2292___c    441 CTTGAAAAATCAAGAAAAA---TTAGCCTTTGTTGCAGATTTAATTGGTA    487

BSNT_03810___    488 AATTGGCTGATGCCGGTTTAGCGGAGGAAGAATTGAAAAAG---------    528
                     |    |||.|     ||..|.|  ||||...|.||||||||         
BPUM_2292___c    488 A----GCTAA-----GTGAATC--AGGACTTAATGAAAAAGAAATTCGCG    526

BSNT_03810___    529 --ATACATGAACAGGCGAATACACTT-TTCACGAGCTACGTGTGA    570
                       ||.||.||..||||||| .||.|| ||.|||..|||.||.|.|
BPUM_2292___c    527 ATATGCACGAGAAGGCGAA-CCAATTATTTACGTCCTATGTTTAA    570


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