Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03800 and BPUM_2286
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_03800___spoIIP.1.24716.seq
# -bsequence dna-align/BPUM_2286___spoIIP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03800___spoIIP-BPUM_2286___spoIIP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03800___spoIIP-BPUM_2286___spoIIP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03800___spoIIP
# 2: BPUM_2286___spoIIP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1282
# Identity: 834/1282 (65.1%)
# Similarity: 834/1282 (65.1%)
# Gaps: 149/1282 (11.6%)
# Score: 2492.5
#
#
#=======================================
BSNT_03800___ 1 ATGAGAAATAAA---CGCAGAAACAGACAGATTGTTGTTGCGGTAAATGG 47
||||.|||.|.| |||.|.....|||||.|.||.||||||.|.|||||
BPUM_2286___s 1 ATGAAAAAAAGACCCCGCCGTCCTCGACAGTTGGTCGTTGCGATTAATGG 50
BSNT_03800___ 48 AGGGAAAGCGGT-AAAAGCCATCTTTC-TATTTATCGTAAGC----CTTA 91
|...||||..|| ||||| .|| |||| ||||||| ||| |||.
BPUM_2286___s 51 AACAAAAGTAGTCAAAAG-TAT-TTTCTTATTTAT----AGCCTCGCTTG 94
BSNT_03800___ 92 TCGTGATTTTTGTTCTATCCGGTGTGCTGACGTCTCTCCGGCCGGAACTT 141
|.||..|.|||||..|.||.||.|.|.||||.|||.|...||||||.||.
BPUM_2286___s 95 TTGTAGTGTTTGTGATGTCAGGAGCGTTGACATCTTTAAAGCCGGAGCTA 144
BSNT_03800___ 142 AGGCCGTCGTCTGA-----CTCTTTTTATGGGATTGCTGAAGA-ATTGCC 185
||.|| | ||||.|.|||||..|.||.||.|| .||.||
BPUM_2286___s 145 AGACC--------ACAAGCCTCTCTATATGGTGTAGCAGATGAGCTTTCC 186
BSNT_03800___ 186 GGGTGACGTATTT--GCACATTTGCTGCGGATGGAAAACCATTATTTCGC 233
|| |.|||.||| .|||| ||..||.|.|||||||||||.|||||.||
BPUM_2286___s 187 GG--GGCGTTTTTCGCCACA-TTAATGGGCATGGAAAACCAATATTTTGC 233
BSNT_03800___ 234 TTCTGACCTCTCTCAAACCGACAGCTCA-------TTTCATCTTTCTCGT 276
.||.|.|.|| ||||.||.||| ||||||.|.|||.|.
BPUM_2286___s 234 CTCAGCCGTC-------CCGAAAGATCAAAAGGGGTTTCATTTCTCTGGA 276
BSNT_03800___ 277 CTTTCTTTAAAGCTGGCGACGAGCATTAACCTCGAAGATCCGCGGAGCTT 326
||.||..|.|||||.|||||.||.||.||..|.|||||.|||||.||.||
BPUM_2286___s 277 CTGTCACTGAAGCTTGCGACTAGTATCAATTTAGAAGACCCGCGTAGTTT 326
BSNT_03800___ 327 TCTCGGTCGGGAGCTGCCGGGGTTTGCACAATTTGATACCGAGATTTTGT 376
|||.||..|.||.||.||.||.||||.|||.||||||||..|.|||.|.|
BPUM_2286___s 327 TCTAGGGAGAGAACTCCCAGGCTTTGAACATTTTGATACAAAAATTATCT 376
BSNT_03800___ 377 TAGCTGGACAAGGGACGGATTATACGAATATGCCTGCGGAATCGCCGCCG 426
||||.||..||||.||.||||||||.||.|||||...|||||||||||||
BPUM_2286___s 377 TAGCGGGTGAAGGAACAGATTATACCAACATGCCAATGGAATCGCCGCCG 426
BSNT_03800___ 427 CCGTCTAAG----GTGATGGAGGAAGAAAGAGAAGCGAATTTGGCAGAGA 472
|| ||| ||.||..|.||.||||.||||||.||.||||||||..
BPUM_2286___s 427 CC----AAGTGAAGTCATCCAAGATGAAAAAGAAGCAAACTTGGCAGAAC 472
BSNT_03800___ 473 TTGAAAAACAGCAAACG-CAATCAGATAATGCACAAAAAGATCC------ 515
|.||.||.| .|| ||| |||| .|||..|||||| ||
BPUM_2286___s 473 TGGACAAGC-----TCGACAA--AGAT-GTGCCGAAAAAG--CCTGCGAA 512
BSNT_03800___ 516 ---GCCCAAACAAACAACAGGTGATA---AAAAGGTCGTGTTTATCTATC 559
|||..|.|...|.|||| ||.| |||||.| ||||..||.||.|
BPUM_2286___s 513 AGAGCCGGATCGGTCGACAG--GAAAACGAAAAGCT-GTGTACATTTACC 559
BSNT_03800___ 560 ACACGCACAATACCGAATCATATCTCCCTCTATTAAAAGGCGAGACCGAT 609
||||.||.|||||.|||||||||.|.||..|.||||||||.||.||..||
BPUM_2286___s 560 ACACACATAATACGGAATCATATTTACCATTTTTAAAAGGAGAAACGAAT 609
BSNT_03800___ 610 CCTGACATGGCGCGCCATTCTAAAGCCAACGTCACGCTTGTAGGAGATAT 659
||..|||..||.||.||.|||||||..||.|||||.|||||.||.||.||
BPUM_2286___s 610 CCAAACAATGCACGGCACTCTAAAGTGAATGTCACCCTTGTCGGCGACAT 659
BSNT_03800___ 660 GTTCGGACAAGCGCTTGAATC-CCAGGGAATCGGAGCCACAGTGAATAAA 708
|||||||.|.||||||| ||| .||.||.|||||....||.||..|.|||
BPUM_2286___s 660 GTTCGGAAAGGCGCTTG-ATCAGCAAGGTATCGGGAATACGGTCGACAAA 708
BSNT_03800___ 709 ACCGATATACAGTCAAAATTAAATA----------AAAAAGGCCTAAACT 748
||.|| ||| |.|||.| |||||||..||||.|
BPUM_2286___s 709 ACAGA-----AGT-----TGAAAAACGGCTTCTGCAAAAAGGGTTAAAGT 748
BSNT_03800___ 749 ATGC-CAGGTCCTATGATGAATCAAGGCCGGTTGTGAAAGACGCCCTCGC 797
||.| || |||.|||.||||||||||.|.|||.||.|||||.|||.|.||
BPUM_2286___s 749 ATCCTCA-GTCTTATAATGAATCAAGACTGGTCGTAAAAGAAGCCTTAGC 797
BSNT_03800___ 798 TTCAAACAAAAAT------CTGCAATATATCATTGACATCCACAGAGACT 841
.|||||| ||..|||||.|.||.||.||||||.|.||.|
BPUM_2286___s 798 ------GAAAAATGATGACCTCGAATATTTAATCGATATCCACCGTGATT 841
BSNT_03800___ 842 CACGGCGCAAAAAAGACACAACCGCAACGATTAAAGGAAAAAGCTATGCC 891
|..|..|.||.||.|||||.||.||...|||.|||||.||||..||.||.
BPUM_2286___s 842 CGAGAAGAAAGAAGGACACTACTGCCGAGATCAAAGGGAAAAAATACGCG 891
BSNT_03800___ 892 AGGGTAGCCTTTGTCGTCGGGAAAAAAAGCA--AAAACTTCGAAGAAAAC 939
||..|.||.|||||.|| ||.|||.|||.| |||.||..||..|||||
BPUM_2286___s 892 AGAATTGCGTTTGTTGT--GGGAAAGAAGAATCAAAGCTATGAGAAAAAC 939
BSNT_03800___ 940 TATAAAATTGCGAGTGAGCTTCATAAACTGATGGAGAAAAAATACCCCGG 989
...||..||||||..|||.||||..|..||||||||||||||||....||
BPUM_2286___s 940 CTCAAGCTTGCGACGGAGTTTCACCATTTGATGGAGAAAAAATATAAAGG 989
BSNT_03800___ 990 ACTTAGCACAGGTGTCTTTTCCAAAGGCTCGCCA--GGCGATAATGGTGT 1037
|||.||....|||||.|||.||||||| ||..| ||.||||||||..|
BPUM_2286___s 990 ACTCAGTGTCGGTGTGTTTGCCAAAGG--CGAAATTGGTGATAATGGAAT 1037
BSNT_03800___ 1038 TTACAATCAGGATTTAACCGATAGAGCGCTTTTGCTCGAGTTTGGCGGAG 1087
|||.|||||.||||||.||||.|.|||.|||.|..|.||.||||||||||
BPUM_2286___s 1038 TTATAATCAAGATTTATCCGACAAAGCCCTTCTTTTAGAATTTGGCGGAG 1087
BSNT_03800___ 1088 TAGATAATAATCTCGAAGAGCTGCAGCGTGCGGCTAACGCGGCCGCGGAC 1137
|.|||||||||.|.|||||..||.|...|||..|.||.||.||.||.||.
BPUM_2286___s 1088 TGGATAATAATATGGAAGAATTGAAAAATGCATCCAATGCAGCAGCTGAT 1137
BSNT_03800___ 1138 GTATTCAGCGAAATGTACTGGGATGCTGAAAAGGTCAACGCAGCGAGC-- 1185
||.||||||||.||.|.|||||||||.|||||.||.|||| ||
BPUM_2286___s 1138 GTCTTCAGCGACATTTTCTGGGATGCGGAAAAAGTAAACG------GCAA 1181
BSNT_03800___ 1186 -----GGGGAGACGAAAAAAC------AATAA 1206
.||..|| |||||||| ||
BPUM_2286___s 1182 ATCAAAGGATGA-GAAAAAACGCTCTTAA--- 1209
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