Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03796 and BPUM_2283

See Amino acid alignment / Visit BSNT_03796 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:21
# Commandline: needle
#    -asequence dna-align/BSNT_03796___hemN.1.24716.seq
#    -bsequence dna-align/BPUM_2283___hemN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03796___hemN-BPUM_2283___hemN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03796___hemN-BPUM_2283___hemN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03796___hemN
# 2: BPUM_2283___hemN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity:     821/1191 (68.9%)
# Similarity:   821/1191 (68.9%)
# Gaps:         102/1191 ( 8.6%)
# Score: 2649.5
# 
#
#=======================================

BSNT_03796___      1 TTGAAATCAGCTTATATCCATATCCCATTTTGTGAGCATATTTGCCACTA     50
                     .|||||.||||.||.||.||.||.||||||||||||||.|||||||||||
BPUM_2283___h      1 ATGAAAGCAGCATACATTCACATTCCATTTTGTGAGCACATTTGCCACTA     50

BSNT_03796___     51 CTGCGATTTCAATAAATATTTTATTCAAAGTCAGCCAGTCGACGAGTATT    100
                     .||.|||||||||||||.|||.|||.|||..|||||||||||.||.||.|
BPUM_2283___h     51 TTGTGATTTCAATAAATTTTTCATTAAAACGCAGCCAGTCGATGAATACT    100

BSNT_03796___    101 TAAACGCACTCGAACAGGAAATGATAAATACAAT--AGCAAAAACCGGG-    147
                     ||...||.||.|||.|.||.|||....|.||.||  |||||||   ||| 
BPUM_2283___h    101 TAGCGGCTCTTGAAAAAGAGATGCAGCACACGATTGAGCAAAA---GGGT    147

BSNT_03796___    148 CAGCCTGATCTTAAAACAATCTTTATCGGAGGAGGCACGCCAACCTCCCT    197
                     .|||..||.||.||.||.||||||||.||.||.||.||.|||||.||..|
BPUM_2283___h    148 GAGCAAGAACTAAAGACGATCTTTATTGGCGGGGGGACTCCAACATCATT    197

BSNT_03796___    198 GTC--TGAGGAACAGCTTAAAAAGCTAATGGACATGATCAACCGCGTGCT    245
                     |.|  |.||  .|||||..|..||||.|||.|||..|||.||||.|||.|
BPUM_2283___h    198 GACCGTCAG--CCAGCTAGATCAGCTCATGAACAGCATCCACCGTGTGTT    245

BSNT_03796___    246 AAAGCCCTCAAGCGAC----TTATCGGAATTTGCGGTTGAAGCGAATCCG    291
                     |||.||.||||...||    ||    ||||||||.||.|||||.||.||.
BPUM_2283___h    246 AAAACCGTCAAAAAACCTGGTT----GAATTTGCAGTGGAAGCAAACCCA    291

BSNT_03796___    292 GACGACTTGTC-CGCAGAGAAATTAAAAATATTAAAAGAAGCAGGCGTAA    340
                     ||.||.||.|| |.| |||||.||..|..|.|||||||||||.||.||.|
BPUM_2283___h    292 GATGAATTATCACTC-GAGAAGTTGCATGTGTTAAAAGAAGCCGGTGTCA    340

BSNT_03796___    341 ATCGCCTCAGCTTTGGTGTGCAAACGTTCGAAGACGATCTGTTAGAAAAA    390
                     ||||..|.||||||||.||.|||||.||.|||||.|||||..|..|||||
BPUM_2283___h    341 ATCGGTTAAGCTTTGGCGTCCAAACCTTTGAAGATGATCTACTCAAAAAA    390

BSNT_03796___    391 ATCGGCCGAGTGCA-CAAGCAA-AAAGATGTATTCACCTCTTTTGAAAGA    438
                     |||||.|||||.|| |||  || ||||||||..||||.|||||.||..||
BPUM_2283___h    391 ATCGGACGAGTTCATCAA--AAGAAAGATGTTCTCACGTCTTTCGAGCGA    438

BSNT_03796___    439 GCGCGGGATATCGGTTTTGAGAATATCAGTCTTGATCTCATGTTCGGGCT    488
                     ||..|.|||.||||.|||||.||.||.||.|||||.|||||||| .||||
BPUM_2283___h    439 GCAAGAGATGTCGGATTTGACAACATTAGCCTTGACCTCATGTT-TGGCT    487

BSNT_03796___    489 T-CCGGGGCAAACCCTC-----AAGCATCTGGAACATTCCATAAA--CAC    530
                     | |||        |.||     ||||||      |||..|||.||  |||
BPUM_2283___h    488 TGCCG--------CATCAAGAAAAGCAT------CATGTCATGAATTCAC    523

BSNT_03796___    531 T-------GCTTTATCACT-GGATGCCGAGCATTATTCCGTTTACTCCCT    572
                     |       |||||.|||.| ||| ||.|||||||||||.||.|||||.||
BPUM_2283___h    524 TTGAGACAGCTTTCTCATTAGGA-GCAGAGCATTATTCTGTCTACTCACT    572

BSNT_03796___    573 TATTGTAGAACCGAAAACGGTATTTTATAATTTGATGCAAAAAGGGCGGC    622
                     .|||||.||.|||||||||||.|||||.||.||.|||||||||||....|
BPUM_2283___h    573 GATTGTGGAGCCGAAAACGGTGTTTTACAACTTAATGCAAAAAGGAAAAC    622

BSNT_03796___    623 TTCATCTTCCGCCGCAGGAGCAGGAAGCTGAAATGTATGAAATGGTGATG    672
                     |.|||.|.||.|||||.||.|..||.||||||||||||||..|.||||||
BPUM_2283___h    623 TACATTTACCACCGCAAGAACGTGAGGCTGAAATGTATGAGCTTGTGATG    672

BSNT_03796___    673 AGCCAGATGGAA------GCTCACGGCATT-CATCAATATGAAATCAGCA    715
                          ||||.||      || ||||| ||| ||||||||.||.|||||||
BPUM_2283___h    673 -----GATGAAATGGAGCGC-CACGG-ATTACATCAATACGAGATCAGCA    715

BSNT_03796___    716 ACTTTGCTAAGGCAGGCATGGAATCTAAGCACAATCTAACGTATTGGAGC    765
                     |.|..||.||..|.||..|.|||....||||.||.||.||.|||||||||
BPUM_2283___h    716 ATTACGCCAAACCTGGATTTGAAAGCCAGCATAACCTGACCTATTGGAGC    765

BSNT_03796___    766 AACGAACAATATTTCGGTTTCGGAGCCGGCGCTCACGGATATATCGGCGG    815
                     ||.|||.|.|||||||||||.||.||.||.||.|||||.|||.|.|..||
BPUM_2283___h    766 AATGAAGACTATTTCGGTTTTGGTGCAGGGGCACACGGGTATGTAGATGG    815

BSNT_03796___    816 CACACGAACAGTGAACGTCGGACCTGTTAAGCATTACATTGACCTGAT--    863
                     ||..||||..|||||||..|||||.||.|||||||||.|.||.|||||  
BPUM_2283___h    816 CATCCGAAATGTGAACGCAGGACCAGTAAAGCATTACTTGGAACTGATTG    865

BSNT_03796___    864 AGCTGAAAAGGGTTTTCCGTACAGAGATACACATGAAGTAACAACAGAAG    913
                     |||  |||..||.||.|||.|.|.|||.||.|||.||||.||||.||.||
BPUM_2283___h    866 AGC--AAACTGGGTTCCCGCATAAAGAAACTCATCAAGTCACAAAAGCAG    913

BSNT_03796___    914 AACAGATTGAGGAAGAAATGTTTTTAGGTTTGAGAAAAACAGCCGGTGTC    963
                     |||||||.||.|||||||||||||||||..|..||||||..|..||.|| 
BPUM_2283___h    914 AACAGATAGAAGAAGAAATGTTTTTAGGCCTTCGAAAAATTGAAGGGGT-    962

BSNT_03796___    964 AGCAAAAAA-----CGATTCGCAGAAAAATACGGCCGTTCCCTGGATGGA   1008
                         .||||     .|.|||..||..|||||.||...|||.|..||.|..
BPUM_2283___h    963 ----GAAAAGTGCCGGCTTCCAAGCCAAATATGGTGCTTCACCAGAGGCT   1008

BSNT_03796___   1009 C-TTTTCCCAAGCGTGTTAAAAGACCTCGCTGAAAAAGGGCTGATTCACA   1057
                     | |||||||..| ||..|..||||..|.|..||||||||.||.|||...|
BPUM_2283___h   1009 CTTTTTCCCTCG-GTTCTTGAAGAATTAGAAGAAAAAGGTCTCATTGTAA   1057

BSNT_03796___   1058 --------ATTCGGAGTCTGCCGTTTATTTGACTCATCAAGGGAAATTAT   1099
                             |||.|.|.|    ||||||    ||.....||||.|||||.|
BPUM_2283___h   1058 AAGATGATATTGGCATT----CGTTTA----ACAAGAAAAGGAAAATTGT   1099

BSNT_03796___   1100 TAGGCAATGAAGTTTTTGGCGCTTTTTTGGGTGAGTTATAA   1140
                     ||||.||||||||.|||...||.|||.|.||||||||||||
BPUM_2283___h   1100 TAGGAAATGAAGTATTTCAAGCGTTTCTCGGTGAGTTATAA   1140


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