Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03790 and BPUM_2279
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:20
# Commandline: needle
# -asequence dna-align/BSNT_03790___dnaJ.1.24716.seq
# -bsequence dna-align/BPUM_2279___dnaJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03790___dnaJ-BPUM_2279___dnaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03790___dnaJ-BPUM_2279___dnaJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03790___dnaJ
# 2: BPUM_2279___dnaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1144
# Identity: 878/1144 (76.7%)
# Similarity: 878/1144 (76.7%)
# Gaps: 26/1144 ( 2.3%)
# Score: 3322.0
#
#
#=======================================
BSNT_03790___ 1 ATGAGTAAGCGTGATTACTATGAAGTGCTGGGAGTAAGTAAGAGCGCTTC 50
|||||||||||||||||||||||||||||.||.||.|||||||||||.||
BPUM_2279___d 1 ATGAGTAAGCGTGATTACTATGAAGTGCTTGGCGTGAGTAAGAGCGCCTC 50
BSNT_03790___ 51 AAAGGATGAAATTAAAAAAGCTTATCGGAAGCTGTCAAAAAAATATCATC 100
|||.||.||.||.|||||.||.||.||.|||||.||||||||.|||||.|
BPUM_2279___d 51 AAAAGACGAGATCAAAAAGGCATACCGCAAGCTTTCAAAAAAGTATCACC 100
BSNT_03790___ 101 CTGATATTAACAAAGAAGCCGGATCAGATGAAAAATTTAAAGAGGTAAAA 150
||||||||||.||||||||.||.||||||||.|||||.|||||.||||||
BPUM_2279___d 101 CTGATATTAATAAAGAAGCTGGCTCAGATGAGAAATTCAAAGAAGTAAAA 150
BSNT_03790___ 151 GAAGCGTACGAAACGCTGTCAGATGACCAAAAACGTGCGCATTACGATCA 200
|||||.||.|||||.||.||.||.||.|||||||||.||||.||.||.||
BPUM_2279___d 151 GAAGCCTATGAAACCCTTTCTGACGATCAAAAACGTTCGCAGTATGACCA 200
BSNT_03790___ 201 ATTTGGTCACACTGATCCTAACCAAGGCTTCGGCGGCGGAGGTTTTGGC- 249
.||.|||||.||.|||||.|||||||||||.||.|||||.|||||||||
BPUM_2279___d 201 GTTCGGTCATACAGATCCAAACCAAGGCTTTGGTGGCGGCGGTTTTGGCG 250
BSNT_03790___ 250 --GGCGGCGATTTCGGCGGTTT---TGGTTTCGATGATATTTTCTCAAGT 294
||.||.||.||.|||||.|| |||.||.|||||.||.|||||.|||
BPUM_2279___d 251 GAGGTGGAGACTTTGGCGGCTTCGGTGGCTTTGATGACATCTTCTCTAGT 300
BSNT_03790___ 295 ATTTTCGGCGGAGGCACAAGACGGAGAGATCCAAATGCTCCGCGCCAGGG 344
|||||.|||||.||..|.|||.|.||||||||||||||.||.||.||.||
BPUM_2279___d 301 ATTTTTGGCGGTGGAGCCAGAAGAAGAGATCCAAATGCACCACGTCAAGG 350
BSNT_03790___ 345 TGCTGATTTACAGTATACGATGACCCTGTCGTTTGAGGATGCGGCTTTCG 394
.||.||.||.||.|||||.|||||.||.||.|||||.||.||.||.||.|
BPUM_2279___d 351 AGCAGACTTGCAATATACAATGACGCTTTCATTTGAAGAAGCAGCATTTG 400
BSNT_03790___ 395 GTAAAGAAACAACCATCGAAATTCCCCGCGAGGAAACGTGCGAAACATGT 444
|.||||||.||||.||.|||||.||.||.||.|||.|.||.||||||||.
BPUM_2279___d 401 GGAAAGAAGCAACGATTGAAATCCCTCGTGAAGAATCATGTGAAACATGC 450
BSNT_03790___ 445 AAAGGCTCAGGTGCGAAACCTGGAACAAATCCAGAA-ACATGCTCCCACT 493
.|.||.|||||.||.||.|||||.|||.||.| ||| |||||.||.||.|
BPUM_2279___d 451 CATGGATCAGGGGCAAAGCCTGGGACAGATGC-GAAGACATGTTCACATT 499
BSNT_03790___ 494 GCGGAGGCTCCGGCCAGTTAAACGTGGAGCAAAATACACCGTTTGGAAAA 543
||||.||||||||.||.|||||.||.||||||...||.||||||||.|||
BPUM_2279___d 500 GCGGCGGCTCCGGTCAATTAAATGTTGAGCAATCAACTCCGTTTGGTAAA 549
BSNT_03790___ 544 GTCGTTAACAGACGGGTCTGCCACCACTGTGAAGGTACAGGCAAA----- 588
||.||.|||.|..|.||.||..||.|||||...||.|||||.|||
BPUM_2279___d 550 GTGGTCAACCGCAGAGTATGTAACTACTGTAGCGGAACAGGAAAACAAAT 599
BSNT_03790___ 589 --ATCATTAAAAACAAATGTGCGGAC-TGCGGCGGCAAAGGAAAAATCAA 635
||| ||||||||.| .|| ||.||||||...||.||..|...
BPUM_2279___d 600 CGATC-------ACAAATGTTC-TACATGTGGCGGCTCTGGTAAGGTGCG 641
BSNT_03790___ 636 AAAACGCAAGAAAATCAATGTGACAATTCCAGCCGGTGTAGATGACGGGC 685
.||.||.|||||||||||||||||.||.|||||.|||||.||.||.||.|
BPUM_2279___d 642 TAAGCGTAAGAAAATCAATGTGACGATCCCAGCTGGTGTTGACGATGGTC 691
BSNT_03790___ 686 AGCAGCTTCGTCTATCGGGACAGGGTGAACCAGGAATAAACGGCGGCCCT 735
|||||||..|..|.||.||.||.||.||.|||||..||||.||.||.|||
BPUM_2279___d 692 AGCAGCTCAGAGTGTCTGGTCAAGGGGAGCCAGGTGTAAATGGAGGGCCT 741
BSNT_03790___ 736 GCTGGGGATTTATTTGTCGTGTTCCATGTACGCGCACACGAGTTCTTCGA 785
.|.||.|||||||||||.|||||||||||.|||.|.||.||.|||||.||
BPUM_2279___d 742 CCAGGCGATTTATTTGTTGTGTTCCATGTGCGCTCGCATGAATTCTTTGA 791
BSNT_03790___ 786 GCGTGACGGCGATGATATTTACTGTGAAATGCCGTTAACGTTTGCTCAGG 835
|||||||||.|||||.||||||||.||||||||||||||.|||||.||.|
BPUM_2279___d 792 GCGTGACGGAGATGACATTTACTGCGAAATGCCGTTAACCTTTGCACAAG 841
BSNT_03790___ 836 CTGCTCTTGGAGATGAGGTAGAAGTGCCGACGCTGCATGGAAAAGTGAAA 885
||||..|.||.||.||..|.|||||||||||..|.||.||.|||||.|||
BPUM_2279___d 842 CTGCATTAGGTGACGAAATTGAAGTGCCGACATTACACGGTAAAGTAAAA 891
BSNT_03790___ 886 TTGAAAATTCCGGCCGGTACACAAACAGGAACGAAATTTAGA-TTAAGAG 934
||||||.|.||.||.||.||||||||.||.|||||||||||| |||| ||
BPUM_2279___d 892 TTGAAAGTCCCTGCTGGCACACAAACTGGCACGAAATTTAGACTTAA-AG 940
BSNT_03790___ 935 GCAAAGGCGTTCAAAATGTCAGAGGCTATGGACAGGGTGACCAGCATATC 984
|.|||||.||..|||||||..|.||||||||.||.||.||.|||||||||
BPUM_2279___d 941 GAAAAGGTGTGAAAAATGTACGCGGCTATGGTCAAGGCGATCAGCATATC 990
BSNT_03790___ 985 GTCGTCCGCGTCGTTACGCCGACAAATCTGACTGATAAACAAAAAGACAT 1034
||.||.||.|||||.||.||.||||||.|.||.||.||.||||||||.||
BPUM_2279___d 991 GTTGTACGAGTCGTCACACCAACAAATTTAACGGACAATCAAAAAGATAT 1040
BSNT_03790___ 1035 TATCCGCGAATTTGCCGAAGTCAGCGGAAACCTGCCTGACGAACAGGAAA 1084
.||..|..|||||||.|||||.||||||||....||.||||||||.||||
BPUM_2279___d 1041 CATTAGAAAATTTGCTGAAGTGAGCGGAAATAAACCGGACGAACAAGAAA 1090
BSNT_03790___ 1085 TGAGTTTCTTTGACAAGGTAAAACGCGCGTTTAAAGGTGATTAA 1128
||||.|||||.||.||||||||||||||.||||||||.||.|||
BPUM_2279___d 1091 TGAGCTTCTTCGATAAGGTAAAACGCGCATTTAAAGGCGAGTAA 1134
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