Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03788 and BPUM_2277
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:20
# Commandline: needle
# -asequence dna-align/BSNT_03788___yqeU.1.24716.seq
# -bsequence dna-align/BPUM_2277___yqeU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03788___yqeU-BPUM_2277___yqeU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03788___yqeU-BPUM_2277___yqeU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03788___yqeU
# 2: BPUM_2277___yqeU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 838
# Identity: 550/838 (65.6%)
# Similarity: 550/838 (65.6%)
# Gaps: 134/838 (16.0%)
# Score: 1697.0
#
#
#=======================================
BSNT_03788___ 1 ATGCAACGATATTTTATCGAGCTCACGAAGCAGCAAATAGAGGAAG---- 46
||||||||||||||||||||.|||||||| |||.||||
BPUM_2277___y 1 ATGCAACGATATTTTATCGACCTCACGAA---------AGAAGAAGTGAT 41
BSNT_03788___ 47 CGC---CGGCTTTTTCG--ATTACCGGCGAAGATGTTCATCATATTGTGA 91
||| .||...|.||| ||.|..||.||||||||.|||||..||...|
BPUM_2277___y 42 CGCAAAGGGAGCTATCGTCATCAAAGGTGAAGATGTACATCACCTTTCCA 91
BSNT_03788___ 92 ACGTGATGAGAATGAATG-AGGGAGATCAGATTATCTGCTGCTCTCA--- 137
||||.|||.|.|||||.| |||| |||...|||...|| |.|.|
BPUM_2277___y 92 ACGTCATGCGCATGAAAGCAGGG----CAGGAAATCCTTTG-TTTAACGA 136
BSNT_03788___ 138 -AGACGGCTTCGAGGC-------AAAATGTGAACTTCAATCTGTTTCCAA 179
|||||||||.||.|| ||||| ||| |.||| |..|||
BPUM_2277___y 137 CAGACGGCTTTGAAGCGCTCAGTAAAAT-TGA--TACAA-----TAACAA 178
BSNT_03788___ 180 AG--ATAAAGTGTCCTGCCTTGTGA--TAGAA---TGGACGAATAAAAAC 222
|| |.|| ||.|| ||||.| |.||| |||||.|||.|..||
BPUM_2277___y 179 AGGAAGAA---GTACT---TTGTCACCTTGAAGGCTGGACAAATCAGGAC 222
BSNT_03788___ 223 AGAGAGCTTCCGATAAAGGTCTATATTGCGAGCGGCCTTCCGAAAGGAGA 272
|||||.|||||..|||.||||...||||||||.||.||.||.||||||||
BPUM_2277___y 223 AGAGAACTTCCTGTAAGGGTCACAATTGCGAGTGGTCTCCCAAAAGGAGA 272
BSNT_03788___ 273 TAAGCTTGAATGGATTATTCAAAAGGGGACTGAGCTCGGAGCTCATGCCT 322
|||||||||....|||||.|||||.||.||.|||||.||.||...|||.|
BPUM_2277___y 273 TAAGCTTGAGCTAATTATCCAAAAAGGCACAGAGCTTGGCGCGAGTGCAT 322
BSNT_03788___ 323 TTATTCCTTTCCAAGCCGCGCGTTCTGTTGTCAAGCTGGATGACAAAAAG 372
||||.|||||.|||||.||.||||||.||...|||||.|||.|.||.|||
BPUM_2277___y 323 TTATCCCTTTTCAAGCGGCTCGTTCTATTACAAAGCTTGATCAAAAGAAG 372
BSNT_03788___ 373 GCAAAGAAAAAGCGGGAAAGATGGACGAAAATTGCAAAGGAAGCGGCTGA 422
.||.|.|||||.||.||..|.|||..|||||||||.||.|||||.|||||
BPUM_2277___y 373 TCACATAAAAAACGAGATCGCTGGGAGAAAATTGCGAAAGAAGCAGCTGA 422
BSNT_03788___ 423 GCAATCGTACCGTAACGAA----GTGCCGCGAGTGATGGATGTCCATT-- 466
|||.||.||||| ||| .|.|| |.|||..|.||||.|
BPUM_2277___y 423 GCAGTCCTACCG----GAATATCATTCC-----TCATGTTTATCCAGTAT 463
BSNT_03788___ 467 ---CTTTTCAGCAGCTTCTTCAAAGGAT--GC-AG-GATTTCGATAAATG 509
|.|||.|..||||...||| || || || ||.|||||||||||
BPUM_2277___y 464 CAACGTTTAAAGAGCTGACTCA----ATTAGCTAGTGAATTCGATAAATG 509
BSNT_03788___ 510 TGTCGTTGCATACGAGGAGTCATCGAAGCAAGGGGAAATAAG-CGCATTC 558
|||||||||||||||.||.||||||||..||||.||...||| |||.|||
BPUM_2277___y 510 TGTCGTTGCATACGAAGAATCATCGAAAGAAGGAGAGCAAAGCCGCTTTC 559
BSNT_03788___ 559 AGCGCGATTGTAAGCAGCCTTCC-------GAAAGG------ATCATCTC 595
| .|.||| || ||| |||||| |.|.|..|
BPUM_2277___y 560 A----AACTGT-----GC--TCCAACAAATGAAAGGCGGACAAACCTTGC 598
BSNT_03788___ 596 TA-TTGATCGTATTTGGTCCAGAAGGCGGTTTAACAGAAGCTGAGGTTGA 644
|| || ||.||||||||.|||||||||||..|||||...|||.||||
BPUM_2277___y 599 TAGTT----GTTTTTGGTCCTGAAGGCGGTTTGGCAGAAAAGGAGATTGA 644
BSNT_03788___ 645 ACGGCTCACAGAGCAAGAC--GGT---GTGACGTGCGGCCTTGGACCGAG 689
|..||| .|.||..| ||| ||.|..|||||.||.|||||..|
BPUM_2277___y 645 AGCGCT-----TGAAACGCTTGGTGCAGTCATTTGCGGGCTCGGACCACG 689
BSNT_03788___ 690 AATTTTAAGGACAGAAACCGCTCCGCTATACGCATTGAGC-----GCGAT 734
.||||||||.||||||||.|||||.||.||||| || ||.||
BPUM_2277___y 690 CATTTTAAGAACAGAAACAGCTCCTCTTTACGC-----GCTTTCTGCTAT 734
BSNT_03788___ 735 TTCTTATCAAACAGAGTTATTAAGAGGTG-ATCAGTAA 771
.|||||||||||||||||||||||||||| ||||..|
BPUM_2277___y 735 ATCTTATCAAACAGAGTTATTAAGAGGTGAATCATGA- 771
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