Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03786 and BPUM_2275
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:20
# Commandline: needle
# -asequence dna-align/BSNT_03786___yqeW.1.24716.seq
# -bsequence dna-align/BPUM_2275___yqeW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03786___yqeW-BPUM_2275___yqeW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03786___yqeW-BPUM_2275___yqeW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03786___yqeW
# 2: BPUM_2275___yqeW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity: 642/1007 (63.8%)
# Similarity: 642/1007 (63.8%)
# Gaps: 160/1007 (15.9%)
# Score: 1863.5
#
#
#=======================================
BSNT_03786___ 1 ATGTTAATTCTGATTAGCTTTA-----CTGCTCTTATATT-ATTCTTT-- 42
||| ||...||||| |||| .|||.|||||.|| |||.|||
BPUM_2275___y 1 ATG---ATGGCGATTA--TTTATTTTTGTGCACTTATTTTCATTTTTTTA 45
BSNT_03786___ 43 --CTCACAGGCATGAACATGCTTCGAAAAGGCTTAATTTCTATGGCGTAC 90
.||| |||....||||..|||||||.|||||..|..|.||||..
BPUM_2275___y 46 TGGTCA-----ATGGGTTTGCTGAGAAAAGGATTAATGGCGCTTGCGTCG 90
BSNT_03786___ 91 TCAAAAATTGA-AGATCGTTTGCTTTTATTTACAGACCATCCGTTAAAAG 139
||....||||| |.|||..|| |||.|.||||||||.||.||..||||.|
BPUM_2275___y 91 TCTCGTATTGAGAAATCACTT-CTTCTCTTTACAGATCACCCAGTAAAGG 139
BSNT_03786___ 140 CGTTTCTTA-TCAGCATTGTATTTACGGGGATACTTCAGAGCAGTTCAGC 188
| .|||||| ||||.|||.|||||||.||.||.|||||.|||||||||||
BPUM_2275___y 140 C-ATTCTTAGTCAGTATTATATTTACAGGAATTCTTCAAAGCAGTTCAGC 188
BSNT_03786___ 189 CTTTATGGTCATTGTCATCGGCTTTGTAAGTGCGGGCGTTCTTTCTTTTA 238
.|||||||||||.||.|||||||||||.|||.|.|||.||||.|||||||
BPUM_2275___y 189 GTTTATGGTCATCGTGATCGGCTTTGTCAGTACAGGCATTCTCTCTTTTA 238
BSNT_03786___ 239 AGCGGACGATACCGATGATTCTGGGGACAAATGTTGGCTCTACTTTTACA 288
|...|.|.||.||.||||||||.||.||.|||.||||||||||.||||||
BPUM_2275___y 239 AAAAGTCCATTCCAATGATTCTTGGTACGAATATTGGCTCTACGTTTACA 288
BSNT_03786___ 289 ACTGAATTTATTGCTATCAAAATGGATATTTTGATTTGGGTTCTT-TTAA 337
||.||||||||.||.||.|||||||||.||||.||.|||| |||| .|..
BPUM_2275___y 289 ACAGAATTTATCGCCATTAAAATGGATGTTTTCATGTGGG-TCTTGATCC 337
BSNT_03786___ 338 TAGGAGGT---TTAT---TGTTTTTTCTGACTGGCAGG-TATCCTTTGAA 380
|||..||| .||| ||.|.|| .|||||| .||||||| |.
BPUM_2275___y 338 TAGTTGGTCTGATATGCATGATGTT------AGGCAGGAAATCCTTT-AG 380
BSNT_03786___ 381 ACAGCTG--GGAACAAGCTTCCTCGGACTGGGCATCATCTTCTTTTGCAT 428
.|| || ||||.|||..|..|.||.||.||.||.|||||.||.|||
BPUM_2275___y 381 GCA--TGCAGGAAAAAGTATATTTGGGCTCGGGATGATCTTTTTCTGC-- 426
BSNT_03786___ 429 CAGCGGATTCA--GC------CACCTTGCCGGGCCGCTGACGAAG----- 465
||||| || .|..||||.||...|.|||| |||
BPUM_2275___y 427 ------ATTCAAGGCTTTTCTAAAATTGCAGGTATGATGAC-AAGTCAGT 469
BSNT_03786___ 466 CTGAAAACGGGAGCCGACGTT---CTATACCATGTTAACG-------ATT 505
|||| |||.|| ||.| |.|| .||.| |||
BPUM_2275___y 470 CTGA-----------GACATTGCGCTTT--CTTG-AAATGATGCAGCATT 505
BSNT_03786___ 506 CAAACTGGTCCGCTTTGCTCATC-GGCATGGTGTTAACTGCCATCATTCA 554
|..|||||.|.||..|||| .|| ||||...|.||.||.||.||..||||
BPUM_2275___y 506 CTGACTGGACGGCACTGCT-TTCTGGCACTATTTTTACAGCGATTGTTCA 554
BSNT_03786___ 555 CTCCAGTTCTGTCTGTATCGGCATTTTGATGAGTTTTATGAATGAAGGGA 604
.||.||.||.||.||||||||.|||||.|||.|.||||||||||||||.|
BPUM_2275___y 555 TTCGAGCTCCGTTTGTATCGGTATTTTAATGGGGTTTATGAATGAAGGAA 604
BSNT_03786___ 605 TTATCGGACT----GACACAGGCGATGAGCGTCGTACTCGGATCAAATAT 650
...|.||.|| || |||| ||.|||.|.|||.|.||.||.|||||
BPUM_2275___y 605 CAGTTGGGCTTCAGGA---AGGC-ATCAGCTTTGTATTAGGGTCCAATAT 650
BSNT_03786___ 651 CGGGACATGCATTACAGCTGTCATGGCTGCTGTATCCGGTGGATATGCGG 700
|||||||.|.||||||||.||.||||||||..||||.||.||.|||||.|
BPUM_2275___y 651 CGGGACAAGTATTACAGCCGTAATGGCTGCCATATCTGGCGGCTATGCAG 700
BSNT_03786___ 701 CGAAACAGACAGCGTATGCGCATGTGGTATTTAACGTGCTAGGGGTGGCT 750
|...|||.|||||.|||||.||.||..|.|||||.|||||.||.|||
BPUM_2275___y 701 CACGACAAACAGCTTATGCACACGTTTTGTTTAATGTGCTCGGAGTG--- 747
BSNT_03786___ 751 CTAGTAT---TGCCTTTTCTGACCGCAGCGACCGGCTTTGTAGAGCAGTT 797
||..||| |.||.|||||..||.|...|||.|..||.|| .||..||
BPUM_2275___y 748 CTTTTATGTCTCCCGTTTCTCGCCACGATGACTGAATTCGT--CGCCCTT 795
BSNT_03786___ 798 AT--CACCCGATCCTGCCCA--AAGGATTGCTCATTTCAGCCTTTTATTT 843
.| ||...|.|||.||||| || |||||.|||||.|||||..|.|||
BPUM_2275___y 796 CTTGCAAATGCTCCAGCCCAGCAA--ATTGCACATTTTAGCCTGCTGTTT 843
BSNT_03786___ 844 AATGTAGTAACAGCTCTTT--TATTTCTTCCGCTT--------------A 877
|||||.|.| |||||||| | ||||||||..|| |
BPUM_2275___y 844 AATGTGGCA--AGCTCTTTGCT-TTTCTTCCCATTCATCCGTCCATTTCA 890
BSNT_03786___ 878 CAAACTTG----------TTTTACCGCTTGATTCACCTTCTTATCCCGGC 917
||.| ||| ||||||||..|.|.|||
BPUM_2275___y 891 CACA-TTGATTTTATGTCTTTTACCGAATCAATCA--------------- 924
BSNT_03786___ 918 TAAATAA 924
||||||
BPUM_2275___y 925 -AAATAA 930
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