Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03786 and BPUM_2275

See Amino acid alignment / Visit BSNT_03786 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:20
# Commandline: needle
#    -asequence dna-align/BSNT_03786___yqeW.1.24716.seq
#    -bsequence dna-align/BPUM_2275___yqeW.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03786___yqeW-BPUM_2275___yqeW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03786___yqeW-BPUM_2275___yqeW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03786___yqeW
# 2: BPUM_2275___yqeW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity:     642/1007 (63.8%)
# Similarity:   642/1007 (63.8%)
# Gaps:         160/1007 (15.9%)
# Score: 1863.5
# 
#
#=======================================

BSNT_03786___      1 ATGTTAATTCTGATTAGCTTTA-----CTGCTCTTATATT-ATTCTTT--     42
                     |||   ||...|||||  ||||     .|||.|||||.|| |||.|||  
BPUM_2275___y      1 ATG---ATGGCGATTA--TTTATTTTTGTGCACTTATTTTCATTTTTTTA     45

BSNT_03786___     43 --CTCACAGGCATGAACATGCTTCGAAAAGGCTTAATTTCTATGGCGTAC     90
                       .|||     |||....||||..|||||||.|||||..|..|.||||..
BPUM_2275___y     46 TGGTCA-----ATGGGTTTGCTGAGAAAAGGATTAATGGCGCTTGCGTCG     90

BSNT_03786___     91 TCAAAAATTGA-AGATCGTTTGCTTTTATTTACAGACCATCCGTTAAAAG    139
                     ||....||||| |.|||..|| |||.|.||||||||.||.||..||||.|
BPUM_2275___y     91 TCTCGTATTGAGAAATCACTT-CTTCTCTTTACAGATCACCCAGTAAAGG    139

BSNT_03786___    140 CGTTTCTTA-TCAGCATTGTATTTACGGGGATACTTCAGAGCAGTTCAGC    188
                     | .|||||| ||||.|||.|||||||.||.||.|||||.|||||||||||
BPUM_2275___y    140 C-ATTCTTAGTCAGTATTATATTTACAGGAATTCTTCAAAGCAGTTCAGC    188

BSNT_03786___    189 CTTTATGGTCATTGTCATCGGCTTTGTAAGTGCGGGCGTTCTTTCTTTTA    238
                     .|||||||||||.||.|||||||||||.|||.|.|||.||||.|||||||
BPUM_2275___y    189 GTTTATGGTCATCGTGATCGGCTTTGTCAGTACAGGCATTCTCTCTTTTA    238

BSNT_03786___    239 AGCGGACGATACCGATGATTCTGGGGACAAATGTTGGCTCTACTTTTACA    288
                     |...|.|.||.||.||||||||.||.||.|||.||||||||||.||||||
BPUM_2275___y    239 AAAAGTCCATTCCAATGATTCTTGGTACGAATATTGGCTCTACGTTTACA    288

BSNT_03786___    289 ACTGAATTTATTGCTATCAAAATGGATATTTTGATTTGGGTTCTT-TTAA    337
                     ||.||||||||.||.||.|||||||||.||||.||.|||| |||| .|..
BPUM_2275___y    289 ACAGAATTTATCGCCATTAAAATGGATGTTTTCATGTGGG-TCTTGATCC    337

BSNT_03786___    338 TAGGAGGT---TTAT---TGTTTTTTCTGACTGGCAGG-TATCCTTTGAA    380
                     |||..|||   .|||   ||.|.||      .|||||| .||||||| |.
BPUM_2275___y    338 TAGTTGGTCTGATATGCATGATGTT------AGGCAGGAAATCCTTT-AG    380

BSNT_03786___    381 ACAGCTG--GGAACAAGCTTCCTCGGACTGGGCATCATCTTCTTTTGCAT    428
                     .||  ||  ||||.|||..|..|.||.||.||.||.|||||.||.|||  
BPUM_2275___y    381 GCA--TGCAGGAAAAAGTATATTTGGGCTCGGGATGATCTTTTTCTGC--    426

BSNT_03786___    429 CAGCGGATTCA--GC------CACCTTGCCGGGCCGCTGACGAAG-----    465
                           |||||  ||      .|..||||.||...|.|||| |||     
BPUM_2275___y    427 ------ATTCAAGGCTTTTCTAAAATTGCAGGTATGATGAC-AAGTCAGT    469

BSNT_03786___    466 CTGAAAACGGGAGCCGACGTT---CTATACCATGTTAACG-------ATT    505
                     ||||           |||.||   ||.|  |.|| .||.|       |||
BPUM_2275___y    470 CTGA-----------GACATTGCGCTTT--CTTG-AAATGATGCAGCATT    505

BSNT_03786___    506 CAAACTGGTCCGCTTTGCTCATC-GGCATGGTGTTAACTGCCATCATTCA    554
                     |..|||||.|.||..|||| .|| ||||...|.||.||.||.||..||||
BPUM_2275___y    506 CTGACTGGACGGCACTGCT-TTCTGGCACTATTTTTACAGCGATTGTTCA    554

BSNT_03786___    555 CTCCAGTTCTGTCTGTATCGGCATTTTGATGAGTTTTATGAATGAAGGGA    604
                     .||.||.||.||.||||||||.|||||.|||.|.||||||||||||||.|
BPUM_2275___y    555 TTCGAGCTCCGTTTGTATCGGTATTTTAATGGGGTTTATGAATGAAGGAA    604

BSNT_03786___    605 TTATCGGACT----GACACAGGCGATGAGCGTCGTACTCGGATCAAATAT    650
                     ...|.||.||    ||   |||| ||.|||.|.|||.|.||.||.|||||
BPUM_2275___y    605 CAGTTGGGCTTCAGGA---AGGC-ATCAGCTTTGTATTAGGGTCCAATAT    650

BSNT_03786___    651 CGGGACATGCATTACAGCTGTCATGGCTGCTGTATCCGGTGGATATGCGG    700
                     |||||||.|.||||||||.||.||||||||..||||.||.||.|||||.|
BPUM_2275___y    651 CGGGACAAGTATTACAGCCGTAATGGCTGCCATATCTGGCGGCTATGCAG    700

BSNT_03786___    701 CGAAACAGACAGCGTATGCGCATGTGGTATTTAACGTGCTAGGGGTGGCT    750
                     |...|||.|||||.|||||.||.||..|.|||||.|||||.||.|||   
BPUM_2275___y    701 CACGACAAACAGCTTATGCACACGTTTTGTTTAATGTGCTCGGAGTG---    747

BSNT_03786___    751 CTAGTAT---TGCCTTTTCTGACCGCAGCGACCGGCTTTGTAGAGCAGTT    797
                     ||..|||   |.||.|||||..||.|...|||.|..||.||  .||..||
BPUM_2275___y    748 CTTTTATGTCTCCCGTTTCTCGCCACGATGACTGAATTCGT--CGCCCTT    795

BSNT_03786___    798 AT--CACCCGATCCTGCCCA--AAGGATTGCTCATTTCAGCCTTTTATTT    843
                     .|  ||...|.|||.|||||  ||  |||||.|||||.|||||..|.|||
BPUM_2275___y    796 CTTGCAAATGCTCCAGCCCAGCAA--ATTGCACATTTTAGCCTGCTGTTT    843

BSNT_03786___    844 AATGTAGTAACAGCTCTTT--TATTTCTTCCGCTT--------------A    877
                     |||||.|.|  ||||||||  | ||||||||..||              |
BPUM_2275___y    844 AATGTGGCA--AGCTCTTTGCT-TTTCTTCCCATTCATCCGTCCATTTCA    890

BSNT_03786___    878 CAAACTTG----------TTTTACCGCTTGATTCACCTTCTTATCCCGGC    917
                     ||.| |||          ||||||||..|.|.|||               
BPUM_2275___y    891 CACA-TTGATTTTATGTCTTTTACCGAATCAATCA---------------    924

BSNT_03786___    918 TAAATAA    924
                      ||||||
BPUM_2275___y    925 -AAATAA    930


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