Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03778 and BPUM_2267

See Amino acid alignment / Visit BSNT_03778 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:19
# Commandline: needle
#    -asequence dna-align/BSNT_03778___yqfD.1.24716.seq
#    -bsequence dna-align/BPUM_2267___yqfD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03778___yqfD-BPUM_2267___yqfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03778___yqfD-BPUM_2267___yqfD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03778___yqfD
# 2: BPUM_2267___yqfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1258
# Identity:     877/1258 (69.7%)
# Similarity:   877/1258 (69.7%)
# Gaps:         128/1258 (10.2%)
# Score: 2903.0
# 
#
#=======================================

BSNT_03778___      1 GTGAAAAATAAATGGCT-GTCTTTTTTTTCGGGTAAGGTCCAG-CTTGAA     48
                     |||||.|||||||||.| |.||.||||.|.||        ||| .|.|||
BPUM_2267___y      1 GTGAAGAATAAATGGTTCGCCTATTTTATTGG--------CAGAGTGGAA     42

BSNT_03778___     49 TTG------ACGGGAAGAGGGATTGAGCGGCTCCTTAATGAATGCACAAG     92
                     .||      |.|||||..||.||||||||||||.|.|||||.|||||.||
BPUM_2267___y     43 GTGGAGATCAAGGGAAACGGCATTGAGCGGCTCATCAATGAGTGCACGAG     92

BSNT_03778___     93 ACAGGGGATTCCGGTCTTTCATGTCA--------AAAAAAAGAAAGAAGC    134
                     |||||.|||..|..|.|||||.||.|        |||.|.||        
BPUM_2267___y     93 ACAGGAGATCACAATGTTTCAAGTGATCCGCCGTAAAGACAG--------    134

BSNT_03778___    135 CGTATCG-TTATATATACAGCT--TCAGGATGTACATGCCTTTCGGCGGG    181
                     ||| .|| ||||.|||.| |||  ||| |||||||||| |||||      
BPUM_2267___y    135 CGT-GCGCTTATTTATTC-GCTTATCA-GATGTACATG-CTTTC------    174

BSNT_03778___    182 TGAGAAGTAAATTTAAAT------GTAAAGCCCG---ATTTATCCATC--    220
                     .||.|||||.|...|.||      ||||  |..|   ||||   ||||  
BPUM_2267___y    175 AGAAAAGTACAAAGACATCATGAGGTAA--CATGTTCATTT---CATCAA    219

BSNT_03778___    221 -GGAAGGGTTTTCCCTTCCTGTTGCTGAAATCAAAGCTGAATATAGGGTT    269
                      .||||||.|||||.|||||..|.||....||||.|..||||||.|||||
BPUM_2267___y    220 AAGAAGGGATTTCCGTTCCTTCTCCTATGGTCAAGGAAGAATATTGGGTT    269

BSNT_03778___    270 TACGATCGGTTTTGCGATTTTTTTCATCCTTTT------GTTTTT---GC    310
                     |||..|.||..|||.|  |||||||       |      |.|.||   ||
BPUM_2267___y    270 TACCCTTGGGATTGTG--TTTTTTC-------TAGCGACGATATTGGCGC    310

BSNT_03778___    311 TGTCCAATATGGTGTGGAAAATTGATGTGACAGGCGCTAAGCCTGAAACA    360
                     |.||.||.||||||||||||||||||.|.|.|||.||.||.||.|||||.
BPUM_2267___y    311 TTTCGAACATGGTGTGGAAAATTGATATTAAAGGAGCCAATCCAGAAACT    360

BSNT_03778___    361 GAACATCAAATGAGGCAGCATCTTA-ATGAAATCGGCGT-CAAAAAGGGC    408
                     ||||||||||||||..||||| ||| |.||.||.||.|| |||||| |||
BPUM_2267___y    361 GAACATCAAATGAGAAAGCAT-TTAGACGAGATTGGGGTACAAAAA-GGC    408

BSNT_03778___    409 CGTCTGCAGTTTTTAATGATGTCGCCCGAAAAAATACAGAAATCATTAAC    458
                     |||.|.||||||.|||||....|.||.||||||||.||.||||||.|.||
BPUM_2267___y    409 CGTTTTCAGTTTCTAATGGGAACACCTGAAAAAATTCAAAAATCACTGAC    458

BSNT_03778___    459 CAATGG--AATAGACAA--TATCACTTGGGTCGGAGTTGATCTGAAGGGG    504
                     |    |  ||||..|||  .||.||.|||||.||.|||||.||.||.||.
BPUM_2267___y    459 C----GCCAATATTCAAAGCATTACATGGGTTGGCGTTGAACTAAACGGT    504

BSNT_03778___    505 ACGACCATTCACATGAAAGTTGTGGAGAAAAATGAGCCCGAAAAAGAAAA    554
                     ||.||..||||.||||||||||||||.||||||||.||.|||||||||||
BPUM_2267___y    505 ACAACATTTCAAATGAAAGTTGTGGAAAAAAATGAACCGGAAAAAGAAAA    554

BSNT_03778___    555 GTATGTTAGCCCGC-GCAATATTGTCGCCAAAAAGAAAGCAACCATTACG    603
                     .|||...||.||.| || |||||||.|||||.|||||.||...|||.|||
BPUM_2267___y    555 ATATACGAGTCCACAGC-ATATTGTGGCCAAGAAGAAGGCGGTCATCACG    603

BSNT_03778___    604 AGAATGTTTGTGCAAAAAGGACAGCCCATGGCCGCCATACACGATCATGT    653
                     |||||||.||||.||||||||.||||..|.|||||..|..|.||.|||| 
BPUM_2267___y    604 AGAATGTATGTGGAAAAAGGAGAGCCGCTTGCCGCAGTTGATGAACATG-    652

BSNT_03778___    654 TGAA-AAGGGGCAGCTGCTTGTTTCGGGACTGATCGGCAGCGAAGACCAT    702
                     |||| ||.||.||..||||.||.||.||.||.|||||||||||||||   
BPUM_2267___y    653 TGAAGAAAGGACAAATGCTCGTCTCTGGCCTCATCGGCAGCGAAGAC---    699

BSNT_03778___    703 CAGCAGGAA---GTCGCCTCAAAAGCAGAAATTTACGGAGAAACCTGGTA    749
                     |||||..||   ||||...|.|||||..|||||||.||||||||.||||.
BPUM_2267___y    700 CAGCAAAAAACGGTCGGTGCTAAAGCGAAAATTTATGGAGAAACGTGGTT    749

BSNT_03778___    750 TAGATCAGAAGTGACAGTCCCGCTTGAAACATTATTTAACGTCTATACGG    799
                     ..|.||.|||||..|.|||||.|||..|||||..|||.|.||||.|||||
BPUM_2267___y    750 CCGTTCTGAAGTTTCTGTCCCTCTTCGAACATCTTTTGATGTCTTTACGG    799

BSNT_03778___    800 GCAAAGTAAGGACAAAGCACAAGCTTT---CTTTTGGTTCTTTGGCAATC    846
                     |.|||.|.|.|||||||||||||||.|   |.|||||...||   ||.|.
BPUM_2267___y    800 GTAAAATGAAGACAAAGCACAAGCTCTCCGCATTTGGAGGTT---CAGTG    846

BSNT_03778___    847 CCGATCTGGGGGATGACGTTTAAAAAAGAGGAATTGAAGCATCCAAAAAC    896
                     ||..|.|||||..|..|.|||||||||||.||.||.|||||.||||||||
BPUM_2267___y    847 CCATTTTGGGGCTTTTCCTTTAAAAAAGATGATTTTAAGCAGCCAAAAAC    896

BSNT_03778___    897 AGAACAAGAAAAGCATTCGCTTCATTTTCTCGGATTTAAGCTCCCTGTAT    946
                     ||||..||||...||..|.||.|||||..|..|.||..|||||||..|.|
BPUM_2267___y    897 AGAAACAGAAGTTCACCCACTCCATTTCTTAAGTTTCCAGCTCCCATTTT    946

BSNT_03778___    947 CCTATGTCAAAGAGCAAACGA---GAGAAAGTGAAGAGGCTTTG---CGA    990
                     ||||||..||||   ||||||   |.|||||||||   .|..||   |||
BPUM_2267___y    947 CCTATGAAAAAG---AAACGACACGCGAAAGTGAA---ACAATGAACCGA    990

BSNT_03778___    991 AAATATACGAAAGAAGAAGCAGTTCAAGAAGGCATTAAATTGGGTAAACA   1040
                     |.|||.||.||..|||||||||||||||.|||.||||||.||||||||.|
BPUM_2267___y    991 ACATACACAAATAAAGAAGCAGTTCAAGCAGGGATTAAAATGGGTAAAAA   1040

BSNT_03778___   1041 GGATGTAGAGGATAAAATAGGCGAAAACGGCGAGGTGAAAAGTGAAAAAG   1090
                     .||..||||.||.||..||||..|||..||.|||||||||||||||||||
BPUM_2267___y   1041 AGAATTAGAAGAGAAGCTAGGTCAAACAGGAGAGGTGAAAAGTGAAAAAG   1090

BSNT_03778___   1091 TTTTGCACCAGACTGTTGAGAATGGTAAAGTAAAGTTGATTATTCTCTAC   1140
                     ||||||||.||||....|.||||||||||||.|||||.||.||.||.|||
BPUM_2267___y   1091 TTTTGCACGAGACAACAGGGAATGGTAAAGTTAAGTTAATCATCCTTTAC   1140

BSNT_03778___   1141 CAAGTTATAGAAGATATCGTTCAAACCACACCTATTG-TCAGGGAGACTG   1189
                     |||||.|||||||||||.||||||.|.|||||||||| ||||||||||| 
BPUM_2267___y   1141 CAAGTAATAGAAGATATTGTTCAACCAACACCTATTGTTCAGGGAGACT-   1189

BSNT_03778___   1190 AAGAATGA   1197
                      ||     
BPUM_2267___y   1190 -AG-----   1191


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