Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03765 and BPUM_2257

See Amino acid alignment / Visit BSNT_03765 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:18
# Commandline: needle
#    -asequence dna-align/BSNT_03765___yqzB.1.24716.seq
#    -bsequence dna-align/BPUM_2257___yqzB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03765___yqzB-BPUM_2257___yqzB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03765___yqzB-BPUM_2257___yqzB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03765___yqzB
# 2: BPUM_2257___yqzB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 749
# Identity:     497/749 (66.4%)
# Similarity:   497/749 (66.4%)
# Gaps:         121/749 (16.2%)
# Score: 1893.0
# 
#
#=======================================

BSNT_03765___      0 --------------------------------------------------      0
                                                                       
BPUM_2257___y      1 GTGGATTTTTGTCTCATTCGGACAAAGATGCGCTATAATATGATGAGTTA     50

BSNT_03765___      1 -------------------------------------------------G      1
                                                                      |
BPUM_2257___y     51 TGAAAATGATATACATAAAGTAAAGATTCGCTCTCTCTATTTAAAGGTGG    100

BSNT_03765___      2 TGAGTACGATCGAACTAAATAAACGGCAAGAACATATTTTGCAGATTGTA     51
                     |||||||.|||||..||||||||||||||||.||.|||||.||||||||.
BPUM_2257___y    101 TGAGTACAATCGAGTTAAATAAACGGCAAGAGCAGATTTTACAGATTGTC    150

BSNT_03765___     52 AAAGAAAACGGGCCGATTACAGGGGAGCATATTGCAGAAAAGCTGAACCT    101
                     |||||.||.||.|||||.||.||.||||||||.||.||....||||||.|
BPUM_2257___y    151 AAAGAGAATGGTCCGATCACTGGAGAGCATATCGCCGATCGTCTGAACTT    200

BSNT_03765___    102 AACCAGGGCGACATTGCGCCCGGATTTAGCCATACTCACCATGTCAGGAT    151
                     |||.||||||||..|..|.|||||||||||||||.|.||.||||||||.|
BPUM_2257___y    201 AACGAGGGCGACCCTCAGACCGGATTTAGCCATATTAACGATGTCAGGCT    250

BSNT_03765___    152 TCCTCGAGGCGCGCCCGAGAGTCGGTTATTTCTATACGGGAAAAACCGGC    201
                     |..|.||.||..|.||.||.||||||||.||.|..||.||||||||.|||
BPUM_2257___y    251 TTTTAGAAGCAAGACCAAGGGTCGGTTACTTTTTCACAGGAAAAACAGGC    300

BSNT_03765___    202 ACACAGCTTTTGGCAGATAAACTCAAAAAGCTTCAGGTGAAAGACTTTCA    251
                     ||.||||||||.||||||||.||.|||||.|||||.||||||||.|||||
BPUM_2257___y    301 ACGCAGCTTTTAGCAGATAAGCTGAAAAAACTTCAAGTGAAAGATTTTCA    350

BSNT_03765___    252 ATCTATCCCCGTAGTGATTCACGAAAACGTTTCTGTGTACGATGCGATTT    301
                     |||.||.||.||.|||||.||.||.||.|||||.||.||.||||||||||
BPUM_2257___y    351 ATCCATTCCAGTGGTGATACATGAGAATGTTTCGGTTTATGATGCGATTT    400

BSNT_03765___    302 GCACCATGTTTTTAGAAGATGTAGGTACTCTGTTTGTGGTGGACCGCGAT    351
                     |.||.|||||||||||.|||||.||.||..|.||.||.|||||   ||||
BPUM_2257___y    401 GTACGATGTTTTTAGAGGATGTGGGCACATTATTCGTTGTGGA---CGAT    447

BSNT_03765___    352 ---GCTGTTTTAGTCGGGGTGCTTTCACGAAAAGACTTGCTCAGAGCGAG    398
                        .||.|||||...||.|||.|.|||.|.||.|||.|.||..|.||.||
BPUM_2257___y    448 CACTCTATTTTAACAGGCGTGTTGTCAAGGAAGGACCTTCTTCGCGCAAG    497

BSNT_03765___    399 CATTGGCCAGCAGGAGCTTACATCGGTCCCTGTTCACATCATCATGACAA    448
                     .|||||..|.|||||||||.||||..|||||||.||.||.||.|||||||
BPUM_2257___y    498 TATTGGAAAACAGGAGCTTCCATCAATCCCTGTCCATATTATTATGACAA    547

BSNT_03765___    449 GGATGCCGAACATTACGGTGTGCAGACGCGAGG--------ATTATGTGA    490
                     |.|||||||||||.||.||.|||   |||.|||        |||||| ||
BPUM_2257___y    548 GAATGCCGAACATCACCGTTTGC---CGCAAGGAAGATTTCATTATG-GA    593

BSNT_03765___    491 TGGACATTGCAAAGCACTTAATAGAAAAACAAATTGATGCACTGCCTGTC    540
                     ||    |.||.||||||||.||.|||||.||.||.||||||||.|||||.
BPUM_2257___y    594 TG----TGGCTAAGCACTTGATTGAAAAGCAGATAGATGCACTTCCTGTT    639

BSNT_03765___    541 ATCAAAGACACCGATAAAGGCTTTGAAGTGATCGGCAGAGTGACAAAAAC    590
                     ||.|||||.||.||||||||||||||||||.||||||||.|.||||||||
BPUM_2257___y    640 ATAAAAGATACGGATAAAGGCTTTGAAGTGGTCGGCAGAATTACAAAAAC    689

BSNT_03765___    591 AAATATGACAAAAATACTTGTCAGTTTATCTGAAAATGAAATCTTATAA    639
                     |||.|||||.|||||||||||.||.|||||.||.||.|||||..|.|||
BPUM_2257___y    690 AAACATGACGAAAATACTTGTTAGCTTATCAGAGAACGAAATAATCTAA    738


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