Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03763 and BPUM_2256

See Amino acid alignment / Visit BSNT_03763 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:18
# Commandline: needle
#    -asequence dna-align/BSNT_03763___yqfL.1.24716.seq
#    -bsequence dna-align/BPUM_2256___yqfL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03763___yqfL-BPUM_2256___yqfL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03763___yqfL-BPUM_2256___yqfL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03763___yqfL
# 2: BPUM_2256___yqfL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 835
# Identity:     605/835 (72.5%)
# Similarity:   605/835 (72.5%)
# Gaps:          35/835 ( 4.2%)
# Score: 2113.5
# 
#
#=======================================

BSNT_03763___      1 ATGAATAACCGCATCATCTATGTTGTATCGGATTCCGTCGGTGAAACGGC     50
                     ||||.|||.|||.|.||.|.|||.|||||.|||||.||.||.||||||||
BPUM_2256___y      1 ATGAGTAATCGCGTAATTTTTGTGGTATCAGATTCAGTAGGAGAAACGGC     50

BSNT_03763___     51 TGAATTGGTAGTAAAAGCAGCACTCAGCCAATTTAACGGATCGGCGGATG    100
                     .||..|.|||||.|||||.|||||.|||||||||.|.||  ||||..||.
BPUM_2256___y     51 AGAGCTCGTAGTCAAAGCGGCACTTAGCCAATTTGATGG--CGGCTCATC     98

BSNT_03763___    101 ATAC---TC--ATGTAAGAAGAATTCCTTATGTTGAAGATATAGGCACTA    145
                     |.||   ||  ||.|.||||||||.||.|||||.||.|||.|.||.||.|
BPUM_2256___y     99 AGACCATTCAAATATTAGAAGAATCCCGTATGTAGAGGATGTCGGTACGA    148

BSNT_03763___    146 TCAATGAAGTGATTTCACTTGCAAAGGCAGACGGCGGCATTATCTGTTTT    195
                     |.||.|||||.||||||||.||.||.|||||...|||.||..||||.|||
BPUM_2256___y    149 TTAAAGAAGTCATTTCACTGGCGAAAGCAGATAACGGAATCGTCTGCTTT    198

BSNT_03763___    196 ACACTCGTGGTGCCGGAAATCAGAGAATATTTGATAGCCGAAGCGGAAAA    245
                     ||.||.||.|||||.|||||..|..|||..||.||   .||||.||.|.|
BPUM_2256___y    199 ACGCTTGTTGTGCCAGAAATGCGCCAATTCTTAAT---TGAAGAGGCAGA    245

BSNT_03763___    246 AGCAAA---TGTTTTATATTATGATATTATCGGCCCGTTGATTGATAAAA    292
                     ||||||   .||..|.||||||||.||.|||||.||..||||.||.||.|
BPUM_2256___y    246 AGCAAACGGAGTCGTTTATTATGACATCATCGGACCACTGATCGACAAGA    295

BSNT_03763___    293 TGGAAACAGCCTACGGTTTAA---CAGCGAAATATGAACCGGGGCGGGTG    339
                     ||||.||.||.||.||   ||   .|||||||.||||.||||||||.||.
BPUM_2256___y    296 TGGAGACTGCTTATGG---AAATGAAGCGAAACATGAGCCGGGGCGTGTA    342

BSNT_03763___    340 CGCCAGCTTGATGAAGATTATTTCAAAAAAGTGGAGGCCATCGAGTTTGC    389
                     ||.||..|.|||||.||.|||||.|||||.||.||.|||||.|||||.||
BPUM_2256___y    343 CGTCAATTAGATGAGGACTATTTTAAAAAGGTTGAAGCCATTGAGTTCGC    392

BSNT_03763___    390 AGTTAAATACGATGATGGACGTGATCCAAGAGGGATTTTAAAAGCTGATA    439
                     |||.||.||.|||||.||..|.||.||||||||.|||.||||.|||||||
BPUM_2256___y    393 AGTGAAGTATGATGACGGCAGAGACCCAAGAGGCATTCTAAAGGCTGATA    442

BSNT_03763___    440 TCGTTTTGATCGGCGTGTCAAGAACGTCTAAAACACCGCTGTCTCAATAT    489
                     |.||..|.|||||.||.|||.|.||.|||||.|||||.||.||||||||.
BPUM_2256___y    443 TTGTACTCATCGGTGTATCACGTACATCTAAGACACCACTATCTCAATAC    492

BSNT_03763___    490 CTCGCACACAAACGCCTGAAGGTTGCCAATGTTCCGATTGTACCGGAGGT    539
                     .|.||.||.|||||.||||||||.||.||.|||||.|||||.||.||.||
BPUM_2256___y    493 TTGGCGCATAAACGGCTGAAGGTAGCGAACGTTCCAATTGTTCCTGAAGT    542

BSNT_03763___    540 TGATCCGCCGGAAGAACTCTTTAACGTTGATCCGAAAAAATGCATCGGTT    589
                     .||||||||.||.||..|.|||...||||||||.||.||||||||||||.
BPUM_2256___y    543 AGATCCGCCAGAGGAGTTATTTTCAGTTGATCCAAAGAAATGCATCGGTC    592

BSNT_03763___    590 TAAAGATTAGCCCTGATAAACTGAATCATATCAGAAAAGAACGCTTAAAA    639
                     |.||.||.||.||.||.|||||.||||||||..|.|||||.||.||.|||
BPUM_2256___y    593 TGAAAATCAGTCCAGACAAACTCAATCATATTCGTAAAGAGCGATTGAAA    642

BSNT_03763___    640 TCACTCGGGCTTAATGATAAAGCGATTTATGCAAATA-TCAACAGAATCA    688
                     ||.||.||..|.||||||...||.||||||||.||.| |.||| |.||.|
BPUM_2256___y    643 TCTCTAGGTTTAAATGATCGCGCAATTTATGCGAACATTGAAC-GGATTA    691

BSNT_03763___    689 AAGAGGAACTCGAGTATTTCGAAAAGATTGTGGATCGGATCGGCTGCCAA    738
                     ||||.||.||.||||||||.|||||..|.|||||.||.||...|||.|||
BPUM_2256___y    692 AAGAAGAGCTAGAGTATTTTGAAAAAGTGGTGGACCGCATTAACTGTCAA    741

BSNT_03763___    739 GTTGTTGATGTTTCAAATAAAGCGGTTGAGGAAACAGCAAATATTATCCA    788
                     |||||||||||.||.||||||||.|||||.|||||.||||||.|.||.||
BPUM_2256___y    742 GTTGTTGATGTATCCAATAAAGCAGTTGAAGAAACGGCAAATGTCATTCA    791

BSNT_03763___    789 TCATCTCAA-----AACAAAAAA-----CATATAA    813
                     |||    ||     |.|||||.|     |..||||
BPUM_2256___y    792 TCA----AATGCTGACCAAAAGAGGTTCCGAATAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03763 and BPUM_2256

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
