Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03761 and BPUM_2255
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03761.1.24716.seq
# -bsequence dna-align/BPUM_2255___yqxD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03761-BPUM_2255___yqxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03761-BPUM_2255___yqxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03761
# 2: BPUM_2255___yqxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 543
# Identity: 351/543 (64.6%)
# Similarity: 351/543 (64.6%)
# Gaps: 90/543 (16.6%)
# Score: 1112.0
#
#
#=======================================
BSNT_03761 1 ATGGAGGGATGGAGAATTACTCTTCTTAATG------AACAAGAAAAGAC 44
.||||||||||||||||||.||..||.|||| ||||.||.|.|||
BPUM_2255___y 1 GTGGAGGGATGGAGAATTAGTCACCTGAATGAACATAAACATGAGAGGAC 50
BSNT_03761 45 GATTTTTGTCGATGCTGATGCTTGTCCGGTAAAAGATGAAAT-------- 86
|||||.|||||||||.|||||||||||.||||||||.|||||
BPUM_2255___y 51 GATTTATGTCGATGCAGATGCTTGTCCTGTAAAAGACGAAATCCTTTCTG 100
BSNT_03761 87 TTTACAAACAGCATCCGAGTATGAAGTTCAAG-----TTCTTTTTGTCGC 131
|| |||||..|.|.|.||.|.|.|| |||.|| ||
BPUM_2255___y 101 TT--------GCATCTCAATTTCAAATACCAGTGACATTCATT-----GC 137
BSNT_03761 132 TTCATTTGAACATTATCAGCTTTCCAGAAGCAA------------TGAAG 169
|||||.|||.||||.||| ||.||| |||||
BPUM_2255___y 138 TTCATATGAGCATTTTCA---------AACCAAAAGATCTCCACTTGAAG 178
BSNT_03761 170 AAAAATGGAAGTATGTTGATCCTCATAAAGAAGCTGCTGATTTATATATC 219
|.|||..||.|||.|||.|.|||||.|||||.||.||||||...||.
BPUM_2255___y 179 ---ATTGGCGGTTTGTAGATACACATAAGGAAGCAGCGGATTTAGTCATT 225
BSNT_03761 220 GC-AAATCACGTGAAACCGGGA---GATATTGTTGTGACGCAGGACATCG 265
|| ||.|||..|| |.|.| ||||||||.||.||.||.|||||.|
BPUM_2255___y 226 GCGAACTCAGTTG----CCGCACATGATATTGTCGTCACCCAAGACATTG 271
BSNT_03761 266 GATTAGCATCTCTGCTGTTGAAC-----AGAAATGTC----TCCGTTATG 306
|..|.||.||..|.|| || |||.|.||| ||| ||
BPUM_2255___y 272 GTCTTGCCTCCTTACT-----ACTTCCAAGACAGGTCATTGTCC----TG 312
BSNT_03761 307 TCGGAAAGAGGTCGTCTTTACAAAGAA-GACACGATTGATTTTGCCCTAG 355
||.||||||||.||..|.||| |.||| ||.||.||||||||||...|.|
BPUM_2255___y 313 TCTGAAAGAGGACGGATGTAC-ACGAACGAAACAATTGATTTTGATTTGG 361
BSNT_03761 356 AGGGCCGTCATTTTTCCGGCAAACAAAGAAGAAAAGGCGTATATGCCAAA 405
|..||.|.|||.|||||.|.|||||..||||||||||.|||||.|..|||
BPUM_2255___y 362 AACGCAGGCATGTTTCCAGTAAACAGCGAAGAAAAGGTGTATACGGAAAA 411
BSNT_03761 406 GGGCCTAAAAA--ATTGAATA-AAGAAGATCGAGAACGATTTATTACACT 452
||.||.||||| .|| || ||||.|||..|.|.|||||||||.|.|.
BPUM_2255___y 412 GGTCCCAAAAAGCTTT---TAGAAGAGGATAAAAAGCGATTTATTGCGCA 458
BSNT_03761 453 GCTGCAAAAAATCCTGTCGAACGATGAAGGGATTTTGCACTAA 495
.||.|||||||||||||||||..|||||||..|||||.|.|||
BPUM_2255___y 459 ACTACAAAAAATCCTGTCGAATCATGAAGGATTTTTGAATTAA 501
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