Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03761 and BPUM_2255

See Amino acid alignment / Visit BSNT_03761 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:17
# Commandline: needle
#    -asequence dna-align/BSNT_03761.1.24716.seq
#    -bsequence dna-align/BPUM_2255___yqxD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03761-BPUM_2255___yqxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03761-BPUM_2255___yqxD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03761
# 2: BPUM_2255___yqxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 543
# Identity:     351/543 (64.6%)
# Similarity:   351/543 (64.6%)
# Gaps:          90/543 (16.6%)
# Score: 1112.0
# 
#
#=======================================

BSNT_03761         1 ATGGAGGGATGGAGAATTACTCTTCTTAATG------AACAAGAAAAGAC     44
                     .||||||||||||||||||.||..||.||||      ||||.||.|.|||
BPUM_2255___y      1 GTGGAGGGATGGAGAATTAGTCACCTGAATGAACATAAACATGAGAGGAC     50

BSNT_03761        45 GATTTTTGTCGATGCTGATGCTTGTCCGGTAAAAGATGAAAT--------     86
                     |||||.|||||||||.|||||||||||.||||||||.|||||        
BPUM_2255___y     51 GATTTATGTCGATGCAGATGCTTGTCCTGTAAAAGACGAAATCCTTTCTG    100

BSNT_03761        87 TTTACAAACAGCATCCGAGTATGAAGTTCAAG-----TTCTTTTTGTCGC    131
                     ||        |||||..|.|.|.||.|.|.||     |||.||     ||
BPUM_2255___y    101 TT--------GCATCTCAATTTCAAATACCAGTGACATTCATT-----GC    137

BSNT_03761       132 TTCATTTGAACATTATCAGCTTTCCAGAAGCAA------------TGAAG    169
                     |||||.|||.||||.|||         ||.|||            |||||
BPUM_2255___y    138 TTCATATGAGCATTTTCA---------AACCAAAAGATCTCCACTTGAAG    178

BSNT_03761       170 AAAAATGGAAGTATGTTGATCCTCATAAAGAAGCTGCTGATTTATATATC    219
                        |.|||..||.|||.|||.|.|||||.|||||.||.||||||...||.
BPUM_2255___y    179 ---ATTGGCGGTTTGTAGATACACATAAGGAAGCAGCGGATTTAGTCATT    225

BSNT_03761       220 GC-AAATCACGTGAAACCGGGA---GATATTGTTGTGACGCAGGACATCG    265
                     || ||.|||..||    |.|.|   ||||||||.||.||.||.|||||.|
BPUM_2255___y    226 GCGAACTCAGTTG----CCGCACATGATATTGTCGTCACCCAAGACATTG    271

BSNT_03761       266 GATTAGCATCTCTGCTGTTGAAC-----AGAAATGTC----TCCGTTATG    306
                     |..|.||.||..|.||     ||     |||.|.|||    |||    ||
BPUM_2255___y    272 GTCTTGCCTCCTTACT-----ACTTCCAAGACAGGTCATTGTCC----TG    312

BSNT_03761       307 TCGGAAAGAGGTCGTCTTTACAAAGAA-GACACGATTGATTTTGCCCTAG    355
                     ||.||||||||.||..|.||| |.||| ||.||.||||||||||...|.|
BPUM_2255___y    313 TCTGAAAGAGGACGGATGTAC-ACGAACGAAACAATTGATTTTGATTTGG    361

BSNT_03761       356 AGGGCCGTCATTTTTCCGGCAAACAAAGAAGAAAAGGCGTATATGCCAAA    405
                     |..||.|.|||.|||||.|.|||||..||||||||||.|||||.|..|||
BPUM_2255___y    362 AACGCAGGCATGTTTCCAGTAAACAGCGAAGAAAAGGTGTATACGGAAAA    411

BSNT_03761       406 GGGCCTAAAAA--ATTGAATA-AAGAAGATCGAGAACGATTTATTACACT    452
                     ||.||.|||||  .||   || ||||.|||..|.|.|||||||||.|.|.
BPUM_2255___y    412 GGTCCCAAAAAGCTTT---TAGAAGAGGATAAAAAGCGATTTATTGCGCA    458

BSNT_03761       453 GCTGCAAAAAATCCTGTCGAACGATGAAGGGATTTTGCACTAA    495
                     .||.|||||||||||||||||..|||||||..|||||.|.|||
BPUM_2255___y    459 ACTACAAAAAATCCTGTCGAATCATGAAGGATTTTTGAATTAA    501


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