Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03758 and BPUM_2253

See Amino acid alignment / Visit BSNT_03758 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:17
# Commandline: needle
#    -asequence dna-align/BSNT_03758___sigA.1.24716.seq
#    -bsequence dna-align/BPUM_2253___sigA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03758___sigA-BPUM_2253___sigA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03758___sigA-BPUM_2253___sigA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03758___sigA
# 2: BPUM_2253___sigA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1124
# Identity:     911/1124 (81.0%)
# Similarity:   911/1124 (81.0%)
# Gaps:          10/1124 ( 0.9%)
# Score: 3690.5
# 
#
#=======================================

BSNT_03758___      1 ATGGCTGATAAACAAACCCA------CGAGACAGAATTAACATTCGACCA     44
                     |||||||||||||||.||||      |||.||.|||||.||.||.||.||
BPUM_2253___s      1 ATGGCTGATAAACAAGCCCACGAAACCGAAACTGAATTGACCTTTGAACA     50

BSNT_03758___     45 AGTAAAAGAGCAATTAACAGAGTCTGGTAAAAAACGTGGCGTTTTGACAT     94
                     .||.|.|||..|..|.||.||..|.|||||||||||.||||||||.||||
BPUM_2253___s     51 GGTGAGAGATAAGCTCACTGAAACGGGTAAAAAACGGGGCGTTTTAACAT    100

BSNT_03758___     95 ATGAAGAAATTGCTGAGCGTATGTCCAGCTTTGAAATTGAATCAGACCAA    144
                     |.|||||||||||.|||||||||||.||||||||||||||||||||||||
BPUM_2253___s    101 ACGAAGAAATTGCAGAGCGTATGTCTAGCTTTGAAATTGAATCAGACCAA    150

BSNT_03758___    145 ATGGATGAGTATTATGAATTTTTAGGTGAACAAGGTGTTGAATTAATTAG    194
                     ||||||||.||.|||||||..|||||.|||||.|||||.||..|.|||||
BPUM_2253___s    151 ATGGATGAATACTATGAATACTTAGGCGAACAGGGTGTAGAGCTCATTAG    200

BSNT_03758___    195 TGAGAATGAAGAAACAGAAGATCCTAATATTCAGCAGCTTGCCAAAGCCG    244
                     |||.||.|||||.||||||||.||||||.||||||||||.||.|||||.|
BPUM_2253___s    201 TGAAAACGAAGAGACAGAAGACCCTAATGTTCAGCAGCTGGCTAAAGCGG    250

BSNT_03758___    245 AAGAAGAATTTGACCTTAATGACCTAAGTGTACCGCCTGGCGTTAAAATC    294
                     ||||||||||||||||.|||||..||||.|||||.||.||.||.|||||.
BPUM_2253___s    251 AAGAAGAATTTGACCTGAATGATTTAAGCGTACCACCAGGTGTCAAAATT    300

BSNT_03758___    295 AATGACCCAGTTCGTATGTATTTAAAGGAAATTGGTCGGGTTAACCTTCT    344
                     |||||.||.|||||||||||.|||||.|||||.||.||.||.|| .||.|
BPUM_2253___s    301 AATGATCCTGTTCGTATGTACTTAAAAGAAATCGGACGCGTCAA-TTTGT    349

BSNT_03758___    345 T-TCTGCAAAAGAAGAAATCGCCTACGCTAAAAAGATTGAAGAAGGTGAC    393
                     | |||||.|||||||||||..|.||.||..|||||||.||||||||.||.
BPUM_2253___s    350 TATCTGCTAAAGAAGAAATTACGTATGCACAAAAGATCGAAGAAGGCGAT    399

BSNT_03758___    394 GAAGAATCTAAACGCAGATTGGCTGAAGCGAACCTGCGGCTTGTTGTCAG    443
                     ||.|||||.|||.|.|||||.||.|||||.|||||.||.||.||||||||
BPUM_2253___s    400 GAGGAATCAAAAAGAAGATTAGCGGAAGCAAACCTTCGTCTCGTTGTCAG    449

BSNT_03758___    444 TATCGCAAAACGGTATGTCGGACGCGGTATGCTGTTCCTTGATCTGATCC    493
                     .|||||.|||||.||.|||||.||.||||||||||||||.||..||||.|
BPUM_2253___s    450 CATCGCGAAACGCTACGTCGGTCGTGGTATGCTGTTCCTGGACTTGATTC    499

BSNT_03758___    494 AGGAAGGAAACATGGGTCTGATGAAAGCCGTTGAAAAATTTGATTATCGC    543
                     |.|||||||||||||||||.|||||.||.|||||.||.||||||||.|||
BPUM_2253___s    500 AAGAAGGAAACATGGGTCTTATGAAGGCAGTTGAGAAGTTTGATTACCGC    549

BSNT_03758___    544 AAAGGTTATAAATTCAGTACGTATGCTACGTGGTGGATCAGACAGGCGAT    593
                     |||||.||.||||||...||.|||||.||.||||||||.|||||||||||
BPUM_2253___s    550 AAAGGATACAAATTCTCAACATATGCGACTTGGTGGATTAGACAGGCGAT    599

BSNT_03758___    594 TACACGTGCCATTGCCGATCAGGCGAGAACGATCCGGATTCCCGTTCATA    643
                     .||.|||||.||||||||||||||.|||||.|||.||||.||.|||||||
BPUM_2253___s    600 CACGCGTGCGATTGCCGATCAGGCAAGAACAATCAGGATCCCGGTTCATA    649

BSNT_03758___    644 TGGTTGAAACCATTAATAAATTAATCCGTGTGCAGCGTCAATTACTGCAA    693
                     ||||.|||||||||||||||||.||||||||.||..|.||..|.||||||
BPUM_2253___s    650 TGGTGGAAACCATTAATAAATTGATCCGTGTTCAAAGACAGCTTCTGCAA    699

BSNT_03758___    694 GACTTAGGCAGAGAACCAACACCTGAAGAAATTGCGGAAGATATGGATTT    743
                     |||.||||||||||||||||.||.||.||||||||.|||||.||||||||
BPUM_2253___s    700 GACCTAGGCAGAGAACCAACGCCAGAGGAAATTGCTGAAGACATGGATTT    749

BSNT_03758___    744 AACGCCTGAAAAAGTACGCGAAA-TCTTAAAGATTGCTCAAGAGCCGGTA    792
                     ||||||.|||||.||..|.|||| ||||||| |||||.||||||||.|||
BPUM_2253___s    750 AACGCCAGAAAAGGTTAGAGAAATTCTTAAA-ATTGCACAAGAGCCAGTA    798

BSNT_03758___    793 TCTCTGGAAACACCGATCGGTGAAGAGGATGACTCGCACCTTGGTGATTT    842
                     |||.|.||||||||.||.||||||||.||||||||||||||||||||.||
BPUM_2253___s    799 TCTTTAGAAACACCTATTGGTGAAGAAGATGACTCGCACCTTGGTGACTT    848

BSNT_03758___    843 CATTGAAGACCAAGAAGCAACTTCACCTTCTGACCACGCCGCATACGAGC    892
                     .||||||||||||||.||.||.||.||.||||||||.||.||||||||..
BPUM_2253___s    849 TATTGAAGACCAAGAGGCGACATCTCCATCTGACCATGCTGCATACGAAT    898

BSNT_03758___    893 TATTGAAAGAGCAGCTGGAAGATGTGCTTGATACGTTAACTGATCGTGAA    942
                     |.||.|||||||||||.||||||||..|.||.|||.|.||.||.||||||
BPUM_2253___s    899 TGTTAAAAGAGCAGCTTGAAGATGTATTAGACACGCTGACGGACCGTGAA    948

BSNT_03758___    943 GAAAATGTATTGCGTCTTCGATTCGGTCTTGATGACGGCCGTACAAGAAC    992
                     |||||||||.||.|.||.||.|||||.||.||||||||..|.|||.|.||
BPUM_2253___s    949 GAAAATGTACTGAGACTACGTTTCGGACTAGATGACGGAAGAACACGTAC    998

BSNT_03758___    993 ATTAGAAGAGGTCGGCAAAGTATTTGGAGTAACGAGAGAGCGTATTCGAC   1042
                     .|||||||||||.||.||.||.||.||.||.||.|||||||||||.||.|
BPUM_2253___s    999 GTTAGAAGAGGTTGGAAAGGTGTTCGGCGTCACAAGAGAGCGTATCCGCC   1048

BSNT_03758___   1043 AAATCGAAGCCAAAGCGTTGCGGAAACTAAGACATCCTAGCAGAAGTAAA   1092
                     ||||.|||||.|||||..|.||.|||.|||||||.||.||||||||||||
BPUM_2253___s   1049 AAATTGAAGCGAAAGCTCTTCGTAAATTAAGACACCCAAGCAGAAGTAAA   1098

BSNT_03758___   1093 CGTTTGAAAGATTTCCTCGAATAA   1116
                     ||.||.|||||.|||.|.||.||.
BPUM_2253___s   1099 CGATTAAAAGACTTCTTAGAGTAG   1122


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