Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03758 and BPUM_2253
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03758___sigA.1.24716.seq
# -bsequence dna-align/BPUM_2253___sigA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03758___sigA-BPUM_2253___sigA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03758___sigA-BPUM_2253___sigA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03758___sigA
# 2: BPUM_2253___sigA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1124
# Identity: 911/1124 (81.0%)
# Similarity: 911/1124 (81.0%)
# Gaps: 10/1124 ( 0.9%)
# Score: 3690.5
#
#
#=======================================
BSNT_03758___ 1 ATGGCTGATAAACAAACCCA------CGAGACAGAATTAACATTCGACCA 44
|||||||||||||||.|||| |||.||.|||||.||.||.||.||
BPUM_2253___s 1 ATGGCTGATAAACAAGCCCACGAAACCGAAACTGAATTGACCTTTGAACA 50
BSNT_03758___ 45 AGTAAAAGAGCAATTAACAGAGTCTGGTAAAAAACGTGGCGTTTTGACAT 94
.||.|.|||..|..|.||.||..|.|||||||||||.||||||||.||||
BPUM_2253___s 51 GGTGAGAGATAAGCTCACTGAAACGGGTAAAAAACGGGGCGTTTTAACAT 100
BSNT_03758___ 95 ATGAAGAAATTGCTGAGCGTATGTCCAGCTTTGAAATTGAATCAGACCAA 144
|.|||||||||||.|||||||||||.||||||||||||||||||||||||
BPUM_2253___s 101 ACGAAGAAATTGCAGAGCGTATGTCTAGCTTTGAAATTGAATCAGACCAA 150
BSNT_03758___ 145 ATGGATGAGTATTATGAATTTTTAGGTGAACAAGGTGTTGAATTAATTAG 194
||||||||.||.|||||||..|||||.|||||.|||||.||..|.|||||
BPUM_2253___s 151 ATGGATGAATACTATGAATACTTAGGCGAACAGGGTGTAGAGCTCATTAG 200
BSNT_03758___ 195 TGAGAATGAAGAAACAGAAGATCCTAATATTCAGCAGCTTGCCAAAGCCG 244
|||.||.|||||.||||||||.||||||.||||||||||.||.|||||.|
BPUM_2253___s 201 TGAAAACGAAGAGACAGAAGACCCTAATGTTCAGCAGCTGGCTAAAGCGG 250
BSNT_03758___ 245 AAGAAGAATTTGACCTTAATGACCTAAGTGTACCGCCTGGCGTTAAAATC 294
||||||||||||||||.|||||..||||.|||||.||.||.||.|||||.
BPUM_2253___s 251 AAGAAGAATTTGACCTGAATGATTTAAGCGTACCACCAGGTGTCAAAATT 300
BSNT_03758___ 295 AATGACCCAGTTCGTATGTATTTAAAGGAAATTGGTCGGGTTAACCTTCT 344
|||||.||.|||||||||||.|||||.|||||.||.||.||.|| .||.|
BPUM_2253___s 301 AATGATCCTGTTCGTATGTACTTAAAAGAAATCGGACGCGTCAA-TTTGT 349
BSNT_03758___ 345 T-TCTGCAAAAGAAGAAATCGCCTACGCTAAAAAGATTGAAGAAGGTGAC 393
| |||||.|||||||||||..|.||.||..|||||||.||||||||.||.
BPUM_2253___s 350 TATCTGCTAAAGAAGAAATTACGTATGCACAAAAGATCGAAGAAGGCGAT 399
BSNT_03758___ 394 GAAGAATCTAAACGCAGATTGGCTGAAGCGAACCTGCGGCTTGTTGTCAG 443
||.|||||.|||.|.|||||.||.|||||.|||||.||.||.||||||||
BPUM_2253___s 400 GAGGAATCAAAAAGAAGATTAGCGGAAGCAAACCTTCGTCTCGTTGTCAG 449
BSNT_03758___ 444 TATCGCAAAACGGTATGTCGGACGCGGTATGCTGTTCCTTGATCTGATCC 493
.|||||.|||||.||.|||||.||.||||||||||||||.||..||||.|
BPUM_2253___s 450 CATCGCGAAACGCTACGTCGGTCGTGGTATGCTGTTCCTGGACTTGATTC 499
BSNT_03758___ 494 AGGAAGGAAACATGGGTCTGATGAAAGCCGTTGAAAAATTTGATTATCGC 543
|.|||||||||||||||||.|||||.||.|||||.||.||||||||.|||
BPUM_2253___s 500 AAGAAGGAAACATGGGTCTTATGAAGGCAGTTGAGAAGTTTGATTACCGC 549
BSNT_03758___ 544 AAAGGTTATAAATTCAGTACGTATGCTACGTGGTGGATCAGACAGGCGAT 593
|||||.||.||||||...||.|||||.||.||||||||.|||||||||||
BPUM_2253___s 550 AAAGGATACAAATTCTCAACATATGCGACTTGGTGGATTAGACAGGCGAT 599
BSNT_03758___ 594 TACACGTGCCATTGCCGATCAGGCGAGAACGATCCGGATTCCCGTTCATA 643
.||.|||||.||||||||||||||.|||||.|||.||||.||.|||||||
BPUM_2253___s 600 CACGCGTGCGATTGCCGATCAGGCAAGAACAATCAGGATCCCGGTTCATA 649
BSNT_03758___ 644 TGGTTGAAACCATTAATAAATTAATCCGTGTGCAGCGTCAATTACTGCAA 693
||||.|||||||||||||||||.||||||||.||..|.||..|.||||||
BPUM_2253___s 650 TGGTGGAAACCATTAATAAATTGATCCGTGTTCAAAGACAGCTTCTGCAA 699
BSNT_03758___ 694 GACTTAGGCAGAGAACCAACACCTGAAGAAATTGCGGAAGATATGGATTT 743
|||.||||||||||||||||.||.||.||||||||.|||||.||||||||
BPUM_2253___s 700 GACCTAGGCAGAGAACCAACGCCAGAGGAAATTGCTGAAGACATGGATTT 749
BSNT_03758___ 744 AACGCCTGAAAAAGTACGCGAAA-TCTTAAAGATTGCTCAAGAGCCGGTA 792
||||||.|||||.||..|.|||| ||||||| |||||.||||||||.|||
BPUM_2253___s 750 AACGCCAGAAAAGGTTAGAGAAATTCTTAAA-ATTGCACAAGAGCCAGTA 798
BSNT_03758___ 793 TCTCTGGAAACACCGATCGGTGAAGAGGATGACTCGCACCTTGGTGATTT 842
|||.|.||||||||.||.||||||||.||||||||||||||||||||.||
BPUM_2253___s 799 TCTTTAGAAACACCTATTGGTGAAGAAGATGACTCGCACCTTGGTGACTT 848
BSNT_03758___ 843 CATTGAAGACCAAGAAGCAACTTCACCTTCTGACCACGCCGCATACGAGC 892
.||||||||||||||.||.||.||.||.||||||||.||.||||||||..
BPUM_2253___s 849 TATTGAAGACCAAGAGGCGACATCTCCATCTGACCATGCTGCATACGAAT 898
BSNT_03758___ 893 TATTGAAAGAGCAGCTGGAAGATGTGCTTGATACGTTAACTGATCGTGAA 942
|.||.|||||||||||.||||||||..|.||.|||.|.||.||.||||||
BPUM_2253___s 899 TGTTAAAAGAGCAGCTTGAAGATGTATTAGACACGCTGACGGACCGTGAA 948
BSNT_03758___ 943 GAAAATGTATTGCGTCTTCGATTCGGTCTTGATGACGGCCGTACAAGAAC 992
|||||||||.||.|.||.||.|||||.||.||||||||..|.|||.|.||
BPUM_2253___s 949 GAAAATGTACTGAGACTACGTTTCGGACTAGATGACGGAAGAACACGTAC 998
BSNT_03758___ 993 ATTAGAAGAGGTCGGCAAAGTATTTGGAGTAACGAGAGAGCGTATTCGAC 1042
.|||||||||||.||.||.||.||.||.||.||.|||||||||||.||.|
BPUM_2253___s 999 GTTAGAAGAGGTTGGAAAGGTGTTCGGCGTCACAAGAGAGCGTATCCGCC 1048
BSNT_03758___ 1043 AAATCGAAGCCAAAGCGTTGCGGAAACTAAGACATCCTAGCAGAAGTAAA 1092
||||.|||||.|||||..|.||.|||.|||||||.||.||||||||||||
BPUM_2253___s 1049 AAATTGAAGCGAAAGCTCTTCGTAAATTAAGACACCCAAGCAGAAGTAAA 1098
BSNT_03758___ 1093 CGTTTGAAAGATTTCCTCGAATAA 1116
||.||.|||||.|||.|.||.||.
BPUM_2253___s 1099 CGATTAAAAGACTTCTTAGAGTAG 1122
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