Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03754 and BPUM_2251
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03754___yqfN.1.24716.seq
# -bsequence dna-align/BPUM_2251___yqfN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03754___yqfN-BPUM_2251___yqfN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03754___yqfN-BPUM_2251___yqfN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03754___yqfN
# 2: BPUM_2251___yqfN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 759
# Identity: 446/759 (58.8%)
# Similarity: 446/759 (58.8%)
# Gaps: 150/759 (19.8%)
# Score: 1293.0
#
#
#=======================================
BSNT_03754___ 0 -------------------------------------------------- 0
BPUM_2251___y 1 ATGAATGAAATGAATTTATCAAAACGATTAAAAAGAGTCGCAGACTTTTT 50
BSNT_03754___ 1 -----ATG-----------GCCGATATCGGCTCTGATCACGCATACCTTC 34
||| ||.|||||||||||.|||||.||.||..|.|
BPUM_2251___y 51 ACCAGATGAGGCTGTCTTTGCTGATATCGGCTCAGATCATGCCTATTTGC 100
BSNT_03754___ 35 CTTGTTATGCGGTGCTGAATCATAAAGCCAGCGGG-----GCGATTGCCG 79
|.||.||||||.|.|||.|||||||||| .| ||||||||.|
BPUM_2251___y 101 CGTGCTATGCGATCCTGCATCATAAAGC-----AGTAAAAGCGATTGCTG 145
BSNT_03754___ 80 GAGAAATAACAGACGGCCCATTTTTGTCTGCAAAGCGGCAGGTTGAAAAA 129
|.|||||||||||.||.|||.||...||.||.||||.|||.|| |.|
BPUM_2251___y 146 GTGAAATAACAGAAGGACCACTTCAATCAGCGAAGCAGCAAGT----ACA 191
BSNT_03754___ 130 TCAGGCTTAAACTCG-----CACATTTCTGTAAGGCAGGGAGACGGACTG 174
| ||.||..||.|.| ||.||.||.||.||..|.|||.|.||.||.
BPUM_2251___y 192 T-AGACTAGAATTAGATGACCAGATCTCGGTCAGAAAAGGAAATGGCCTT 240
BSNT_03754___ 175 GAAGTGATTAAAAAAGGTGAAGCTG-ATGCCATTACGATTGCCGGAATGG 223
|||||.|||.||||.||||||| || ||||..|.||||||||.||.||||
BPUM_2251___y 241 GAAGTCATTGAAAAGGGTGAAG-TGAATGCAGTCACGATTGCAGGTATGG 289
BSNT_03754___ 224 GCGGGGCTTTGATCGCTCACATTTTAGAAGCGGGCAAAGACAAATTAACG 273
||||.||..|.|||||...|||||||.|.|..|||||..|.||..|.||.
BPUM_2251___y 290 GCGGAGCACTCATCGCAAGCATTTTAAATGACGGCAAGCATAAGCTCACA 339
BSNT_03754___ 274 GGGAAGGAACGGCTCATTTTACAGCCGAATATTCATGCTGTTCATATCAG 323
|||.|.|||.||||||||.|.|||||||||||.||||||...||.||..|
BPUM_2251___y 340 GGGCATGAAAGGCTCATTCTTCAGCCGAATATCCATGCTCACCACATTCG 389
BSNT_03754___ 324 GGAATGGCTTTATAAAGAAGGATATGCGCTGATAGATGAGGTAATCCTTG 373
...||||||.|||.||||.||.||||...||||.|.|||.||.||..|.|
BPUM_2251___y 390 TTTATGGCTCTATCAAGAGGGGTATGAATTGATGGGTGAAGTCATTTTAG 439
BSNT_03754___ 374 AAGAGGACGG-AAAGTGCTATGAGGTGCTGGTAGCAGAAGCGGGAGACAG 422
|||||||.|| |||.| .||.||..|..|..|.||.|||...||.||||.
BPUM_2251___y 440 AAGAGGATGGCAAAAT-ATACGAAATCATCATCGCCGAAAAAGGCGACAA 488
BSNT_03754___ 423 GGATGCGGCTTATGACGGTATTTC--TTTATCAGCCGGGATGCTCGTCGG 470
.|||...||.|||.|.||.||.|| ||.| |.||||.|||||.||.||
BPUM_2251___y 489 AGATAAAGCCTATAAAGGGATGTCAATTCA--AACCGGCATGCTAGTTGG 536
BSNT_03754___ 471 -CCCTTTCTTGGCAAAAGAAAAAAATGCTGTCTTTTTGAAAAAGTGGACA 519
||.|||||| ||.|||||..||||||..|||||...|...|||||||..
BPUM_2251___y 537 TCCGTTTCTT-GCGAAAGAGCAAAATGACGTCTTCCGGCGCAAGTGGATG 585
BSNT_03754___ 520 CAAGAGCTTCAGCACACTCAAAGCATTTAT-GAACAGATC---AGCCAAG 565
|||||.|||||||| ||| ||..||||| ||.|||
BPUM_2251___y 586 CAAGAACTTCAGCA-------------TATGGAGAAGATCAAAAGTCAA- 621
BSNT_03754___ 566 CGGCGGATACAG--AGCAAAACAAACAAAAATTA--AAGGAGCTCTCCGA 611
||.||| .|||..||.||||.||...| |||||||.| .
BPUM_2251___y 622 ------ATCCAGCAGGCAGCACGAACAGAAGAGAACAAGGAGCGC----C 661
BSNT_03754___ 612 TCGAATGGAGCTG------------------TTAAAGGAGGTAATCGA-T 642
|.||| |||||| ||||||||||| .|.|| |
BPUM_2251___y 662 TTGAA--GAGCTGCATGTGAAAATAAAGATTTTAAAGGAGGT-TTTGACT 708
BSNT_03754___ 643 CATGGATAA 651
..|||.|||
BPUM_2251___y 709 GTTGGCTAA 717
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