Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03752 and BPUM_2250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03752___yqfO.1.24716.seq
# -bsequence dna-align/BPUM_2250___yqfO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03752___yqfO-BPUM_2250___yqfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03752___yqfO-BPUM_2250___yqfO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03752___yqfO
# 2: BPUM_2250___yqfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1175
# Identity: 815/1175 (69.4%)
# Similarity: 815/1175 (69.4%)
# Gaps: 106/1175 ( 9.0%)
# Score: 2654.5
#
#
#=======================================
BSNT_03752___ 1 ATGGATAAAAGTGTAAATGGGCAGCAGATCATCCAGCTGTTTGAACAATT 50
.|||.|||||..|||||.||.||..|.||||||||..|.||||||||.||
BPUM_2250___y 1 TTGGCTAAAACAGTAAACGGACATGAAATCATCCAATTATTTGAACAGTT 50
BSNT_03752___ 51 TTCTCCGAAAGCCTATGCGGTTGAAGGAGATAAAATCGGCCTGCAAATCG 100
|||.||.|||||.|||||..|.|||||.||.||||||||.||.|||||.|
BPUM_2250___y 51 TTCACCAAAAGCATATGCCATGGAAGGTGACAAAATCGGTCTCCAAATTG 100
BSNT_03752___ 101 GCACTTTAAACAAACCAA--TTAAAAATGTGATGGTTACACTT-GATGTG 147
|.||.|||||.||| || |.||.|||||.|||.|.|| ||| |||||.
BPUM_2250___y 101 GAACGTTAAATAAA--AAGGTAAACAATGTCATGATCAC-CTTAGATGTA 147
BSNT_03752___ 148 TTAGAGAGCGTTATCGATGAAGCGATTGAAAAAGAGGTTGACTTGATTAT 197
|||||||..||..|.|||||.||.|||||||||.|.||.||..|.|||||
BPUM_2250___y 148 TTAGAGAATGTGGTAGATGAGGCAATTGAAAAAAATGTGGATCTCATTAT 197
BSNT_03752___ 198 TGCACACCATCCTCCTATTTTCCGGCCGCTAAAGCATATTTCAACAGATC 247
|||.||.|||||.||.||.|||||.|||.||||.|||.|..|.|||||||
BPUM_2250___y 198 TGCTCATCATCCACCGATCTTCCGTCCGTTAAAACATGTAGCGACAGATC 247
BSNT_03752___ 248 AGCCTGCCGGAAGGTTAATTGAAAAGTGTTTGAAGCATGATATTGCTGTT 297
||||.||.|||.||.|.|||||.||.||..|.||.|||||||||||.||.
BPUM_2250___y 248 AGCCAGCTGGACGGATCATTGAGAAATGCATCAAACATGATATTGCAGTA 297
BSNT_03752___ 298 TATGCAGCTCATACAAATTTAGACGTTGCGGACGGCGGCGTGAATGATTT 347
||||..||.|||||.||||||||.||..|.||.||.||.||.||.||.||
BPUM_2250___y 298 TATGTGGCACATACGAATTTAGATGTGACTGATGGAGGAGTCAACGACTT 347
BSNT_03752___ 348 GCTTGCTGAAGCATTAGAGCTGAGTG-AGACGGAAGTGCTG---GCACCT 393
||||||.||.||.|||||.|| || |||...||||| || |..||.
BPUM_2250___y 348 GCTTGCGGAGGCTTTAGAACT---TGAAGAAACAAGTG-TGTTAGTCCCA 393
BSNT_03752___ 394 ACTTATACGGATCCTCTGAAAAAGCTGGCAGTTTACGTGCCGAAGGAATA 443
||.|||...||||...|.|||.||||.||..||||.||.|||.||||||.
BPUM_2250___y 394 ACATATGAAGATCAAATCAAACAGCTTGCCCTTTATGTCCCGCAGGAATT 443
BSNT_03752___ 444 TGAAGAGCAGGTCAGAGCC---------GCGGTTGGAAATGCGGGGGCCG 484
|||||| |||| ||..|.|||||||||||.||||
BPUM_2250___y 444 TGAAGA---------AGCCATCCGTACAGCTTTAGGAAATGCGGGTGCCG 484
BSNT_03752___ 485 GCCATATCGGTGAATACAGCCATTGCGCGTTTTCATCTGAAGGAATCGGC 534
|||||||.||..|.|||||.|||||.|||||||||..|||.||.|..|||
BPUM_2250___y 485 GCCATATTGGCAACTACAGTCATTGTGCGTTTTCAAATGATGGGACAGGC 534
BSNT_03752___ 535 AGCTTTAAGCCATTGGACGGAGCTAAGCCTTTTATCGGTGAAGTGGGAGA 584
||||||...||||..||.|..||..|.||.||.||.||||||...||..|
BPUM_2250___y 535 AGCTTTTTACCATCAGAAGATGCAGACCCGTTCATTGGTGAATCCGGTCA 584
BSNT_03752___ 585 GCTTGAGCTTGTTCATGAAGTAAGACTTGAGACTGTATTTCCTA-AAAGC 633
..|.||..||||..|.|||||..|..||||.||..| |||||.| .|||.
BPUM_2250___y 585 ATTGGAATTTGTGAAAGAAGTGCGGATTGAAACCAT-TTTCCCAGCAAGT 633
BSNT_03752___ 634 ATCGAAAAAGCTGTTA-TCAACGCAATGATAAAAAGC-CATCCATATGAA 681
||.||||||...||.| ||.| |.|||||| .||||| |||||.||||||
BPUM_2250___y 634 ATTGAAAAACAAGTCATTCGA-GAAATGAT-CAAAGCACATCCTTATGAA 681
BSNT_03752___ 682 GAAGTCGCTTACGATATCTATCCTGT-----CGAACAGA-CTCCCGCC-- 723
||||||||| |||..||| | |||||| ||.||.||
BPUM_2250___y 682 GAAGTCGCT---------TATAGTGTACACAC-AACAGATCTTCCACCTA 721
BSNT_03752___ 724 --GAAAAAGGGCTCGGCCGTGTCGGA-ACCCTTAAAACTGAG-----ATG 765
.||||||||||.|||||..|.||| |.| ||| ||| |||
BPUM_2250___y 722 TTCAAAAAGGGCTTGGCCGAATAGGAGAGC--TAA----GAGAACCAATG 765
BSNT_03752___ 766 ACGCTCAAGGAATTCG-CTTT-----ATTTGTGAAAGAC-AAGCTTGACG 808
||.|| .||| | |||| ||||||| ||||| |||||.||.|
BPUM_2250___y 766 ACCCT--TGGA----GACTTTACACAATTTGTG-AAGACAAAGCTGGATG 808
BSNT_03752___ 809 TCAATGGTG-TCAGAATGGTGGG------GGATGCTGACAGCATGGTGAA 851
|.||||||| || |..|.||.|| |||.|||| |.|||||
BPUM_2250___y 809 TAAATGGTGCTC-GCTTTGTAGGTAATCAGGACGCTG------TTGTGAA 851
BSNT_03752___ 852 AAAGGTAGCTGTTCTTGGCGGAGATGGAAACAAGTATATTCATCATGCAA 901
|||.||||||||.|||||||||||.|||||.||.||.||||||||.||||
BPUM_2250___y 852 AAAAGTAGCTGTGCTTGGCGGAGACGGAAATAAATACATTCATCAAGCAA 901
BSNT_03752___ 902 AACGAAAGGGAGCCGATGTTTACGTCACAGGAGATTTATACTTCCATGTG 951
|..|.|.|||.||.|||||.||.||.|||||||||.|.||.|||||.||.
BPUM_2250___y 902 AGAGGATGGGTGCTGATGTGTATGTGACAGGAGATCTTTATTTCCACGTC 951
BSNT_03752___ 952 GCCCATGATGCGATGATGCTTGGCCTAAATGTGGTTGATCCGGGCCATTA 1001
|||||||||||.||||||||.||.||.||.||.||.||.||.||.|||||
BPUM_2250___y 952 GCCCATGATGCCATGATGCTCGGGCTGAACGTAGTAGACCCAGGGCATTA 1001
BSNT_03752___ 1002 CGCAGAAAAAATCATGAAAGAAGGCGTCACGAGAAAACTGACATCAA--- 1048
.||.|||||.||.||||||||.|||||.|.|...||||| ||||
BPUM_2250___y 1002 TGCTGAAAAGATTATGAAAGAGGGCGTAAAGGCGAAACT----TCAATCG 1047
BSNT_03752___ 1049 -TGTGTAACGATAAAAAGTTTGACGTGAATATCTTTGTTTCTGAAACAGA 1097
|.|||...||||||||||.|||.||..|..|.||||||||||||.|..|
BPUM_2250___y 1048 TTATGTTCAGATAAAAAGTATGATGTACAACTGTTTGTTTCTGAATCCAA 1097
BSNT_03752___ 1098 TACAAATCCATTTACATTTCTATAA 1122
.||||||||||||..||||.|.|||
BPUM_2250___y 1098 CACAAATCCATTTCAATTTATGTAA 1122
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