Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03751 and BPUM_2249
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03751___ispH.1.24716.seq
# -bsequence dna-align/BPUM_2249___ispH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03751___ispH-BPUM_2249___ispH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03751___ispH-BPUM_2249___ispH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03751___ispH
# 2: BPUM_2249___ispH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 955
# Identity: 711/955 (74.5%)
# Similarity: 711/955 (74.5%)
# Gaps: 20/955 ( 2.1%)
# Score: 2573.0
#
#
#=======================================
BSNT_03751___ 1 ATGGACGTAATTAAAATTTCACCGCGCGGCTATTGCTATGGTGTTGTTGA 50
|||.|.||||||||||||||.|||||.||||||||||||||.|||||.||
BPUM_2249___i 1 ATGAATGTAATTAAAATTTCGCCGCGTGGCTATTGCTATGGCGTTGTAGA 50
BSNT_03751___ 51 TGCTATGGTCATTGCCAAAAATGCGTCACTAGATAAAAGCTTGCCAAGAC 100
|||.|||||||||||.||||||||..||||.|||||||.|||||||.|.|
BPUM_2249___i 51 TGCAATGGTCATTGCTAAAAATGCCGCACTTGATAAAAACTTGCCACGCC 100
BSNT_03751___ 101 CCATCTATATACTCGGGATGATTGTTCATAATAAACACGTCACTGATGCG 150
|.||.||||||.|.||.||||||||.||.||.||||||||.||.|||||.
BPUM_2249___i 101 CAATTTATATATTAGGTATGATTGTGCACAACAAACACGTGACAGATGCT 150
BSNT_03751___ 151 TTTGAAGAGGAAGGGATTTTTACATTGGACGGCTCTAACCGTCTGGACAT 200
||.|||||.||.|||||||..|||.|.|||||..|.|||||..|||||||
BPUM_2249___i 151 TTCGAAGAAGATGGGATTTACACACTAGACGGACCAAACCGCTTGGACAT 200
BSNT_03751___ 201 CTTAAAGCAGGTTGACAAAGGAACTGTCATTTTCACTGCGCACGGTGTTT 250
.||||||||||||||.|..|||||.||||||||||||||.||.||.||||
BPUM_2249___i 201 TTTAAAGCAGGTTGAAAGCGGAACAGTCATTTTCACTGCCCATGGCGTTT 250
BSNT_03751___ 251 CTCCCGA----AGTCAGAAGAATCGCAGAAGAAAAAGGGTTAGTCGCAAT 296
|.||.|| .|||| |||.||||||||||||||..|.|||||.||
BPUM_2249___i 251 CACCTGAGGTTCGTCA----AATTGCAGAAGAAAAAGGTCTTGTCGCCAT 296
BSNT_03751___ 297 TGATGCTACATGTCCGGATGTGACGAAAACTCATAATCTAATCTTAGAGA 346
||||||.||.|||||.|||||.||||||||.|||.|.||.||.|.|||||
BPUM_2249___i 297 TGATGCAACCTGTCCCGATGTTACGAAAACACATGAACTCATTTCAGAGA 346
BSNT_03751___ 347 TGAAAGAAAAAGGATATCACGTGATCTATATCGGCAAAAAAGGGCATCCA 396
..|.||...|.||||||.|..|.||.||||||||.||||||||||||||.
BPUM_2249___i 347 AAACAGCCGATGGATATGATATTATTTATATCGGGAAAAAAGGGCATCCT 396
BSNT_03751___ 397 GAGCCTGAGGGAGCCGTTGGCGTAGCGCCGGAGATCGTTCA-CTTAGTCG 445
|||||.||||||||.||.||.|||||.||.||.|..||.|| ||| ||||
BPUM_2249___i 397 GAGCCAGAGGGAGCTGTCGGAGTAGCCCCTGACAAGGTACATCTT-GTCG 445
BSNT_03751___ 446 AAACAGAAGAAGATGTAAAGAACCTTGATATCCAAGCAGAGAAGTTAATC 495
||.||||||..||..|..||...||.|||.|...|.||||.||..|..||
BPUM_2249___i 446 AATCAGAAGCCGACATTGAGGCGCTCGATTTAACATCAGATAAACTGCTC 495
BSNT_03751___ 496 GTGACGAATCAAACAACAATGTCTCAATGGGATGTTCACGACATTATGGA 545
.|.||.||.||.||.||.||||||||.||||||||.||||||.|.|||||
BPUM_2249___i 496 ATTACCAACCAGACGACGATGTCTCAGTGGGATGTCCACGACCTGATGGA 545
BSNT_03751___ 546 GCTTGTCAAAGAAAAATATCCTCATGTCGAATATCACCAAGAGATTTGCC 595
|||..|.|||||.|||||||||||.||.|||||.||.|||||.|||||.|
BPUM_2249___i 546 GCTCATAAAAGAGAAATATCCTCACGTTGAATACCATCAAGAAATTTGTC 595
BSNT_03751___ 596 TCGCTACTCAAGTGCGGCAGGAAGCTGTATCAGAGCA----GGCAAAAAA 641
|.||.||.|||||.||.||||||||||||||.||||| ||| .|
BPUM_2249___i 596 TTGCAACGCAAGTACGTCAGGAAGCTGTATCTGAGCAAGCTGGC----CA 641
BSNT_03751___ 642 AGCGGA-CTTAACAATCGTTGTCGGAGACCCGAAAAGCAACAATTCAAAT 690
|||.|| ||| ||.||.||||||||.||.||.|||||.||.||.||.|||
BPUM_2249___i 642 AGCCGATCTT-ACCATTGTTGTCGGCGATCCAAAAAGTAATAACTCCAAT 690
BSNT_03751___ 691 AGGCTTGCTCAAGTGTCAGAGGAAATAGCCGGGACAAAAGCATACCGGAT 740
.|.||.||.|||||||||..|||.||.||.||.||..|.||.|||||.||
BPUM_2249___i 691 CGTCTGGCACAAGTGTCAATGGAGATTGCGGGAACGCAGGCTTACCGTAT 740
BSNT_03751___ 741 CGGCGACTTAAGCGAATTGAAGCTCGAATGGCTGAAAGGCGTTAATACCG 790
.||.|||.||||.||..|.|||||.||.|||||..|||||||.|||||||
BPUM_2249___i 741 TGGTGACCTAAGTGAGCTCAAGCTGGAGTGGCTACAAGGCGTAAATACCG 790
BSNT_03751___ 791 TTGCAGTTACAGCGGGAGCTTCAACACCGACGCCGATCACAAAAGAAGTC 840
||||..||||.||.||.|||||.|||||.||.||.||.||||||||.||.
BPUM_2249___i 791 TTGCCATTACTGCTGGCGCTTCTACACCAACACCTATTACAAAAGAGGTG 840
BSNT_03751___ 841 ATTCGCTTTTTAGAGCAGTTTGATCACGAAGATCCATCAACTTGGACAAC 890
||.||.||.|||||..|.|..||.|..||.|||..|||||||||||..|.
BPUM_2249___i 841 ATCCGTTTCTTAGAAAACTACGAACCGGATGATGAATCAACTTGGAAGAT 890
BSNT_03751___ 891 TGAACATAATATACCGCTCAAAAAAATACTTCCAAAAGTAAAAGCAAAAA 940
.||||......|.||.||....||||||||.|||...||.|||.||||.|
BPUM_2249___i 891 CGAACGGTCGGTTCCTCTTTCGAAAATACTGCCACGCGTGAAAACAAAGA 940
BSNT_03751___ 941 ACTGA 945
|.|.|
BPUM_2249___i 941 AATAA 945
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