Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03735 and BPUM_2231
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:16
# Commandline: needle
# -asequence dna-align/BSNT_03735___yqgC.1.24716.seq
# -bsequence dna-align/BPUM_2231___yqgC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03735___yqgC-BPUM_2231___yqgC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03735___yqgC-BPUM_2231___yqgC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03735___yqgC
# 2: BPUM_2231___yqgC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 505
# Identity: 348/505 (68.9%)
# Similarity: 348/505 (68.9%)
# Gaps: 41/505 ( 8.1%)
# Score: 1094.0
#
#
#=======================================
BSNT_03735___ 1 ATGGATATGTTGTATTGGCTGTTGAT------TGCAGCGGTTTTTATCAT 44
.||||..||.||||||||.|..|.|| |||| ||||||||
BPUM_2231___y 1 TTGGACGTGCTGTATTGGATTCTCATTATTTGTGCA------TTTATCAT 44
BSNT_03735___ 45 TGCCTTTATCGGGCTGGTGTATCCTGTTATTCCGAGCGTAGTATTTATTG 94
|||.|||.|.||.||.||.|||||..||||.||.|||||.||.|||||.|
BPUM_2231___y 45 TGCATTTGTTGGACTTGTTTATCCAATTATCCCTAGCGTGGTTTTTATCG 94
BSNT_03735___ 95 TTGCCGGATTTGTATTGTACGGATTTTTATTTTCA--TTC-AGTCCGTAT 141
||..|||||||.|..|.||.|| |||..|||||| ||| || |||
BPUM_2231___y 95 TTCTCGGATTTATTCTATATGG--TTTCTTTTTCAGCTTCGAG-CCG--- 138
BSNT_03735___ 142 TCTTA----TATGTTCTGGCTTGTTGAGGCAGTTTTTGCCGCAGTATTAT 187
||.| .|.|||.|||||..||.|.||.||.|||.||||||||||||
BPUM_2231___y 139 -CTGACACTGACGTTTTGGCTCATTCAAGCCGTGTTTACCGCAGTATTAT 187
BSNT_03735___ 188 TTGCAGCAGATTACGTGTCGAATCTGCTTGGAGTAAAAAGGTTCGGAGGA 237
||||.||||||||.||.||.|||||..||||.||.||..||||.||.||.
BPUM_2231___y 188 TTGCGGCAGATTATGTCTCAAATCTTATTGGGGTCAAGCGGTTTGGTGGT 237
BSNT_03735___ 238 AGCAAAGCTGCCATATGGGGAAGCACGATCGGTTTATTAATCGGGCCTTT 287
|||...||.||.||.||||||||.||.|||||.||||||.||||.||.||
BPUM_2231___y 238 AGCCGTGCAGCTATTTGGGGAAGTACCATCGGGTTATTAGTCGGTCCCTT 287
BSNT_03735___ 288 TGTCATTCCGGTTGCAGGGATCAT-ATTGGGGCCGTTTATCGGGGCTGTT 336
||||||||||.|||||||.||.|| ||| ||.||.||||||||...||||
BPUM_2231___y 288 TGTCATTCCGATTGCAGGAATTATCATT-GGTCCATTTATCGGAAGTGTT 336
BSNT_03735___ 337 TGCGCAGAACTTATCGTCCATCAGAAGGACTTAAAGTCAGCGT-TTAAAA 385
...|||||.||..|.||.|||||.||.||..|.|||.|| .|| |.|||.
BPUM_2231___y 337 ATTGCAGAGCTCCTTGTTCATCAAAAAGATGTGAAGACA-AGTGTGAAAG 385
BSNT_03735___ 386 TTGGCCTCGGCTCACTCATTGGTTTTTTAACAGGGGTTATTGCAAAGGGC 435
|.||..|.||||||.|.||.||.|||.||.|||||||..||||.||.||.
BPUM_2231___y 386 TAGGATTAGGCTCATTAATCGGATTTATATCAGGGGTATTTGCCAAAGGA 435
BSNT_03735___ 436 ATCATACA---GCTTTTGATGATCGG-ATACTTTTTATGGACGGTCCT-- 479
.|.||.|| || |||||.|.|| || ||||||||.....|||||
BPUM_2231___y 436 TTGATCCAAGCGC---TGATGCTGGGCAT-CTTTTTATTCTATGTCCTTC 481
BSNT_03735___ 480 -ATAA 483
||||
BPUM_2231___y 482 GATAA 486
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