Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03723 and BPUM_2221

See Amino acid alignment / Visit BSNT_03723 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:15
# Commandline: needle
#    -asequence dna-align/BSNT_03723___yqzD.1.24716.seq
#    -bsequence dna-align/BPUM_2221___yqzD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03723___yqzD-BPUM_2221___yqzD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03723___yqzD-BPUM_2221___yqzD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03723___yqzD
# 2: BPUM_2221___yqzD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity:     268/365 (73.4%)
# Similarity:   268/365 (73.4%)
# Gaps:          28/365 ( 7.7%)
# Score: 1031.0
# 
#
#=======================================

BSNT_03723___      1 GTGGAAATTGCTATTATTGCGTTGTTTATCGTCAGTATAGCGCTAATTGC     50
                     .||||||||||.|||||.|..|||.||.|.||||||||.|..||.||.||
BPUM_2221___y      1 ATGGAAATTGCAATTATCGGATTGCTTGTTGTCAGTATTGTACTGATCGC     50

BSNT_03723___     51 ATTCTCATATTCTCAAAGAGACCCGATGAAAGATGTAGAACAGGAACTCG    100
                     |||||||||||.|||||||||.|||||.|||||.||.||.||||||||.|
BPUM_2221___y     51 ATTCTCATATTTTCAAAGAGAGCCGATTAAAGAAGTCGAGCAGGAACTTG    100

BSNT_03723___    101 AAACACTGCAGCTTTCTGCGATGCAGGAAATTTACAAGCTCAAAAAGAAA    150
                     |||||||.||.||.|||||.|||||.|||||.||.||.||.|||||||||
BPUM_2221___y    101 AAACACTTCAACTATCTGCAATGCAAGAAATCTATAAACTGAAAAAGAAA    150

BSNT_03723___    151 ATGACAGTGCTTGAGGAAGAATTACTGGAAACAAACCTTGTCATTCGCAA    200
                     ||||.|||||||||.|||||||||||.|||||||||.|.|||.|||||||
BPUM_2221___y    151 ATGAAAGTGCTTGAAGAAGAATTACTTGAAACAAACATCGTCGTTCGCAA    200

BSNT_03723___    201 ATCAAAGCAGAGCGACATCAATCAAAAA-----------ATCGCTAAACA    239
                     |                 ||.||..|||           ||.||.|.|||
BPUM_2221___y    201 A-----------------CATTCTGAAATTGATCCTTCCATTGCAAGACA    233

BSNT_03723___    240 AATACTTTCTAAATATAATAACGGTATGTCAGCTGAAGCGATTGCTAAAG    289
                     .||..||||.||..||.|.|||||.|||||..|||||||.|||||....|
BPUM_2221___y    234 GATCATTTCAAAGCATCAAAACGGCATGTCTCCTGAAGCCATTGCGCGCG    283

BSNT_03723___    290 CTGAGCATGTATCAGTGGAAGACGTGAATACGATTATCAAGGATAATGAG    339
                     |||||||||||||.||.|||||.||.||||.|||.||.||.||.||.|||
BPUM_2221___y    284 CTGAGCATGTATCTGTAGAAGATGTCAATATGATCATTAAAGACAACGAG    333

BSNT_03723___    340 AAGGTGCTCGTATGA    354
                     |.||||||.||||||
BPUM_2221___y    334 AGGGTGCTTGTATGA    348


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