Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03701 and BPUM_2209
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03701___yqgX.1.24716.seq
# -bsequence dna-align/BPUM_2209___yqgX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03701___yqgX-BPUM_2209___yqgX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03701___yqgX-BPUM_2209___yqgX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03701___yqgX
# 2: BPUM_2209___yqgX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 701
# Identity: 441/701 (62.9%)
# Similarity: 441/701 (62.9%)
# Gaps: 121/701 (17.3%)
# Score: 1278.0
#
#
#=======================================
BSNT_03701___ 1 ------GTGAAATGGAGACGAATGCCAGTAGGGCCGA--TTCAAGCGAAC 42
.||||.||||||.||||||||.|||| |.| |.||||||||.
BPUM_2209___y 1 ATGAAAATGAATTGGAGAAGAATGCCACTAGG--CTATGTACAAGCGAAT 48
BSNT_03701___ 43 GCATATTTTCTCATCAGTG-----ATGATC------AATGCCTGATTTTT 81
||.|||.|| || ||||.| |||||.|.||.|||
BPUM_2209___y 49 GCGTATATT--------TGGAAAAATGAGCACGGAGAATGCTTAATCTTT 90
BSNT_03701___ 82 GATCCGGGCGGCGAGGGACATAAAATCAATCAATACATAAAAGAAAAAGG 131
|||||.|||||.||.|.|||.||..|.|.|..|||..|||||||.|||..
BPUM_2209___y 91 GATCCAGGCGGTGAAGCACAAAAGCTGATTTCATATGTAAAAGAGAAACA 140
BSNT_03701___ 132 GCTGACGCCTTTAGCCATTTTGCTTACACATGCCCATTTTGACCATATTG 181
|||.||.||..|.||..||||.||.||||||||.||||||||.|||||.|
BPUM_2209___y 141 GCTCACACCGCTTGCTGTTTTACTGACACATGCTCATTTTGATCATATCG 190
BSNT_03701___ 182 G-GGCGCTTGATGAAGTGAGAGAAAAATGGGATATCCCTGTTTACCTGCA 230
| |.||| .|||||.|||.|.|.|.|.||||...|.||..|.||..|.||
BPUM_2209___y 191 GTGCCGC-AGATGAGGTGCGCGCAGAGTGGGGAGTGCCACTCTATGTACA 239
BSNT_03701___ 231 TCAAAATGAAAAAAATTGGCTTACGGACGCTTCTTTAAACGGCTCCGGCA 280
..|.|||||||||.|.|||||.|||.|||||...||||||||.||
BPUM_2209___y 240 CGAGAATGAAAAAGAATGGCTCACGAACGCTGAATTAAACGGTTC----- 284
BSNT_03701___ 281 TGCTGCGA-------GGGATAGAA-----GTCACAGCTAAGCCTGCAGAT 318
.||| ||| ||.||.||| ||.|.|| ||| |||.|.|
BPUM_2209___y 285 AGCT-CGATTGATTGGGAATGGAATAACGGTTAAAG--AAG-CTGAAAA- 329
BSNT_03701___ 319 CATCTAATT------GAAGG----CGACGGTGAGTTGAATATCGGGCCGT 358
|| ||||| ||||| | ||.|| ||.||..|||
BPUM_2209___y 330 -AT-TAATTACGTCAGAAGGAACTC---------TTCAA-ATTGGATCGT 367
BSNT_03701___ 359 TTCATTTGGAAACATTA------TT---TACGCCGGGACATTCACCAGGC 399
|| |||||| || .||.||.||.|||||.||||||
BPUM_2209___y 368 TT---------ACATTAGAGATGTTCCACACTCCTGGGCATTCGCCAGGC 408
BSNT_03701___ 400 AGTGTATCTTACTA---CGTGAAAGATGCAGACTTGGTTATCTCCGGAGA 446
|||||||||||||| .|.|.|||| ||..||.||.||.||.||.||
BPUM_2209___y 409 AGTGTATCTTACTATTCGGCGGAAGA---AGGATTTGTGATTTCTGGTGA 455
BSNT_03701___ 447 -----TGTCTTGTTCCAAGGCGGTATAGGACGTACGGATTTAATAGGCGG 491
|.| ||| |||||||.||.||..|.||.||||||.||||.||
BPUM_2209___y 456 CACGCTAT-TTG----AAGGCGGCATCGGGAGAACAGATTTAGTAGGGGG 500
BSNT_03701___ 492 CGATCAAGAGACGCTGCTGACGTCCATTCATGAAAAACTGCTTA----CG 537
|..||||||...||||||....||.||||||.|.||| ||| |.
BPUM_2209___y 501 CAGTCAAGAAGTGCTGCTTCAATCAATTCATAACAAA----TTATTGTCA 546
BSNT_03701___ 538 CTTCCGGAA-CACACGCTGGTGTTAAGCGGCCATGGACCTGAAACAGAC- 585
.|.||.||| || ||.||.||.|||||.||.|||||...|||||| |||
BPUM_2209___y 547 TTACCAGAATCA-ACTCTTGTTTTAAGTGGACATGGCGATGAAAC-GACT 594
BSNT_03701___ 586 GTACTGACTGAGCAGGATCAAAATCCGTTTTTAAATGGGTTTTCATTGTA 635
|||||.||.||||||||.||||||||.|||.|.|||||.|||||..|.||
BPUM_2209___y 595 GTACTCACGGAGCAGGAACAAAATCCATTTATCAATGGTTTTTCTCTTTA 644
BSNT_03701___ 636 A 636
|
BPUM_2209___y 645 A 645
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