Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03701 and BPUM_2209

See Amino acid alignment / Visit BSNT_03701 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:13
# Commandline: needle
#    -asequence dna-align/BSNT_03701___yqgX.1.24716.seq
#    -bsequence dna-align/BPUM_2209___yqgX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03701___yqgX-BPUM_2209___yqgX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03701___yqgX-BPUM_2209___yqgX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03701___yqgX
# 2: BPUM_2209___yqgX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 701
# Identity:     441/701 (62.9%)
# Similarity:   441/701 (62.9%)
# Gaps:         121/701 (17.3%)
# Score: 1278.0
# 
#
#=======================================

BSNT_03701___      1 ------GTGAAATGGAGACGAATGCCAGTAGGGCCGA--TTCAAGCGAAC     42
                           .||||.||||||.||||||||.||||  |.|  |.||||||||.
BPUM_2209___y      1 ATGAAAATGAATTGGAGAAGAATGCCACTAGG--CTATGTACAAGCGAAT     48

BSNT_03701___     43 GCATATTTTCTCATCAGTG-----ATGATC------AATGCCTGATTTTT     81
                     ||.|||.||        ||     ||||.|      |||||.|.||.|||
BPUM_2209___y     49 GCGTATATT--------TGGAAAAATGAGCACGGAGAATGCTTAATCTTT     90

BSNT_03701___     82 GATCCGGGCGGCGAGGGACATAAAATCAATCAATACATAAAAGAAAAAGG    131
                     |||||.|||||.||.|.|||.||..|.|.|..|||..|||||||.|||..
BPUM_2209___y     91 GATCCAGGCGGTGAAGCACAAAAGCTGATTTCATATGTAAAAGAGAAACA    140

BSNT_03701___    132 GCTGACGCCTTTAGCCATTTTGCTTACACATGCCCATTTTGACCATATTG    181
                     |||.||.||..|.||..||||.||.||||||||.||||||||.|||||.|
BPUM_2209___y    141 GCTCACACCGCTTGCTGTTTTACTGACACATGCTCATTTTGATCATATCG    190

BSNT_03701___    182 G-GGCGCTTGATGAAGTGAGAGAAAAATGGGATATCCCTGTTTACCTGCA    230
                     | |.||| .|||||.|||.|.|.|.|.||||...|.||..|.||..|.||
BPUM_2209___y    191 GTGCCGC-AGATGAGGTGCGCGCAGAGTGGGGAGTGCCACTCTATGTACA    239

BSNT_03701___    231 TCAAAATGAAAAAAATTGGCTTACGGACGCTTCTTTAAACGGCTCCGGCA    280
                     ..|.|||||||||.|.|||||.|||.|||||...||||||||.||     
BPUM_2209___y    240 CGAGAATGAAAAAGAATGGCTCACGAACGCTGAATTAAACGGTTC-----    284

BSNT_03701___    281 TGCTGCGA-------GGGATAGAA-----GTCACAGCTAAGCCTGCAGAT    318
                     .||| |||       ||.||.|||     ||.|.||  ||| |||.|.| 
BPUM_2209___y    285 AGCT-CGATTGATTGGGAATGGAATAACGGTTAAAG--AAG-CTGAAAA-    329

BSNT_03701___    319 CATCTAATT------GAAGG----CGACGGTGAGTTGAATATCGGGCCGT    358
                      || |||||      |||||    |         ||.|| ||.||..|||
BPUM_2209___y    330 -AT-TAATTACGTCAGAAGGAACTC---------TTCAA-ATTGGATCGT    367

BSNT_03701___    359 TTCATTTGGAAACATTA------TT---TACGCCGGGACATTCACCAGGC    399
                     ||         ||||||      ||   .||.||.||.|||||.||||||
BPUM_2209___y    368 TT---------ACATTAGAGATGTTCCACACTCCTGGGCATTCGCCAGGC    408

BSNT_03701___    400 AGTGTATCTTACTA---CGTGAAAGATGCAGACTTGGTTATCTCCGGAGA    446
                     ||||||||||||||   .|.|.||||   ||..||.||.||.||.||.||
BPUM_2209___y    409 AGTGTATCTTACTATTCGGCGGAAGA---AGGATTTGTGATTTCTGGTGA    455

BSNT_03701___    447 -----TGTCTTGTTCCAAGGCGGTATAGGACGTACGGATTTAATAGGCGG    491
                          |.| |||    |||||||.||.||..|.||.||||||.||||.||
BPUM_2209___y    456 CACGCTAT-TTG----AAGGCGGCATCGGGAGAACAGATTTAGTAGGGGG    500

BSNT_03701___    492 CGATCAAGAGACGCTGCTGACGTCCATTCATGAAAAACTGCTTA----CG    537
                     |..||||||...||||||....||.||||||.|.|||    |||    |.
BPUM_2209___y    501 CAGTCAAGAAGTGCTGCTTCAATCAATTCATAACAAA----TTATTGTCA    546

BSNT_03701___    538 CTTCCGGAA-CACACGCTGGTGTTAAGCGGCCATGGACCTGAAACAGAC-    585
                     .|.||.||| || ||.||.||.|||||.||.|||||...|||||| ||| 
BPUM_2209___y    547 TTACCAGAATCA-ACTCTTGTTTTAAGTGGACATGGCGATGAAAC-GACT    594

BSNT_03701___    586 GTACTGACTGAGCAGGATCAAAATCCGTTTTTAAATGGGTTTTCATTGTA    635
                     |||||.||.||||||||.||||||||.|||.|.|||||.|||||..|.||
BPUM_2209___y    595 GTACTCACGGAGCAGGAACAAAATCCATTTATCAATGGTTTTTCTCTTTA    644

BSNT_03701___    636 A    636
                     |
BPUM_2209___y    645 A    645


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