Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03700 and BPUM_2208

See Amino acid alignment / Visit BSNT_03700 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:13
# Commandline: needle
#    -asequence dna-align/BSNT_03700___yqgY.1.24716.seq
#    -bsequence dna-align/BPUM_2208___yqgY.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03700___yqgY-BPUM_2208___yqgY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03700___yqgY-BPUM_2208___yqgY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03700___yqgY
# 2: BPUM_2208___yqgY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 247
# Identity:     197/247 (79.8%)
# Similarity:   197/247 (79.8%)
# Gaps:           5/247 ( 2.0%)
# Score: 774.0
# 
#
#=======================================

BSNT_03700___      1 ATGAATCGCATGTTCCGGGTGTTAGGATTTTGGACGGGAATTTTTGCAGT     50
                     |||||||||||||||||.|||.|.||.|||||||||||.||||||||.||
BPUM_2208___y      1 ATGAATCGCATGTTCCGCGTGCTTGGCTTTTGGACGGGTATTTTTGCTGT     50

BSNT_03700___     51 CATGTTTTATTTAGGTGATATGAAAGATGCTTCCCTTTTATTTTTTGGAC    100
                     ||||||.||||||||..|||||||||||||.||..|..|.||.||.||.|
BPUM_2208___y     51 CATGTTCTATTTAGGGCATATGAAAGATGCATCGTTGCTGTTCTTCGGTC    100

BSNT_03700___    101 AGA-CGATCTTATTTGTGTTTCTATCGTATTTGAACTTAACCGAACGCAT    149
                     |.| ||.|||| |||||.|||.||||.||.|||||.|||.|||||.|.||
BPUM_2208___y    101 AAACCGTTCTT-TTTGTATTTTTATCCTACTTGAATTTATCCGAAAGAAT    149

BSNT_03700___    150 GTATATTTATATTTTTGGCGCTTATTTAACAATTTTCTTCGCCGGCTTTA    199
                     |||||||||.|||||.||.||.||.||.||.||||||||.|||||.||||
BPUM_2208___y    150 GTATATTTACATTTTCGGAGCGTACTTGACGATTTTCTTTGCCGGATTTA    199

BSNT_03700___    200 CATATTACTCAATTTTTATTATGGTGCCCGGCGGCGGAGGCCATTAA    246
                     |||||||.||.|||||.||.|||||.|||||...||||   ||||||
BPUM_2208___y    200 CATATTATTCGATTTTCATCATGGTTCCCGGTACCGGA---CATTAA    243


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.