Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03683 and BPUM_2203

See Amino acid alignment / Visit BSNT_03683 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:13
# Commandline: needle
#    -asequence dna-align/BSNT_03683___comGC.1.24716.seq
#    -bsequence dna-align/BPUM_2203___comGC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03683___comGC-BPUM_2203___comGC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03683___comGC-BPUM_2203___comGC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03683___comGC
# 2: BPUM_2203___comGC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 316
# Identity:     218/316 (69.0%)
# Similarity:   218/316 (69.0%)
# Gaps:          41/316 (13.0%)
# Score: 651.5
# 
#
#=======================================

BSNT_03683___      1 ATGAATGAGAAAGGATTTACACTTGTT-GAAATGTTAATCGTGCTCTTTA     49
                     ||||||||.|||||||||||.| |||| |||||||||||.||..|..||.
BPUM_2203___c      1 ATGAATGATAAAGGATTTACTC-TGTTAGAAATGTTAATTGTCATGCTTG     49

BSNT_03683___     50 TTATTTCGATTTTGCTTTTA---ATTACGATACCGAACGTCACGAAACAT     96
                     |.|||||.|||   ||||||   |||||.||.||.||..||||....|||
BPUM_2203___c     50 TGATTTCAATT---CTTTTACTTATTACCATTCCAAATATCACTCGTCAT     96

BSNT_03683___     97 AATCAAACCATTCAAAAAAAGGGCTGTGAA-GGCTTACAAAAC-ATGGTT    144
                     .|||||||.||||||..||||||||||||| |||||  |||.| ||||| 
BPUM_2203___c     97 CATCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTT--AAATCAATGGT-    143

BSNT_03683___    145 AAGGCACAAA--TGACTGCATTTGAGCTTGATCATGAAGGACA-AACTCC    191
                      |.|||||.|  |||..||||.|||..|.||.||.||.|| || |||.||
BPUM_2203___c    144 -AAGCACACAGGTGATGGCATATGAATTAGAGCACGATGG-CAGAACACC    191

BSNT_03683___    192 GAGCCTT-GCCGATTTACAGTCAGAGGGCTATGTGAAAAAGG-----ATG    235
                      |.|.|| ||.||.|||.|...|||.||||||||.|||||||     |.|
BPUM_2203___c    192 -ATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACG    240

BSNT_03683___    236 CTGTCTGTCCAAATGG-TAAGCGCATTATCAT---CACCGGCGGAGAAGT    281
                          |||||.||||| .||||| |||.||||   .|.||||   .|.||
BPUM_2203___c    241 -----TGTCCTAATGGAAAAGCG-ATTGTCATTCAAAACGGC---CATGT    281

BSNT_03683___    282 TAAGGTTGAACATTAA    297
                     .|||..||||   |||
BPUM_2203___c    282 GAAGCATGAA---TAA    294


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