Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03683 and BPUM_2203
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:13
# Commandline: needle
# -asequence dna-align/BSNT_03683___comGC.1.24716.seq
# -bsequence dna-align/BPUM_2203___comGC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03683___comGC-BPUM_2203___comGC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03683___comGC-BPUM_2203___comGC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03683___comGC
# 2: BPUM_2203___comGC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 316
# Identity: 218/316 (69.0%)
# Similarity: 218/316 (69.0%)
# Gaps: 41/316 (13.0%)
# Score: 651.5
#
#
#=======================================
BSNT_03683___ 1 ATGAATGAGAAAGGATTTACACTTGTT-GAAATGTTAATCGTGCTCTTTA 49
||||||||.|||||||||||.| |||| |||||||||||.||..|..||.
BPUM_2203___c 1 ATGAATGATAAAGGATTTACTC-TGTTAGAAATGTTAATTGTCATGCTTG 49
BSNT_03683___ 50 TTATTTCGATTTTGCTTTTA---ATTACGATACCGAACGTCACGAAACAT 96
|.|||||.||| |||||| |||||.||.||.||..||||....|||
BPUM_2203___c 50 TGATTTCAATT---CTTTTACTTATTACCATTCCAAATATCACTCGTCAT 96
BSNT_03683___ 97 AATCAAACCATTCAAAAAAAGGGCTGTGAA-GGCTTACAAAAC-ATGGTT 144
.|||||||.||||||..||||||||||||| ||||| |||.| |||||
BPUM_2203___c 97 CATCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTT--AAATCAATGGT- 143
BSNT_03683___ 145 AAGGCACAAA--TGACTGCATTTGAGCTTGATCATGAAGGACA-AACTCC 191
|.|||||.| |||..||||.|||..|.||.||.||.|| || |||.||
BPUM_2203___c 144 -AAGCACACAGGTGATGGCATATGAATTAGAGCACGATGG-CAGAACACC 191
BSNT_03683___ 192 GAGCCTT-GCCGATTTACAGTCAGAGGGCTATGTGAAAAAGG-----ATG 235
|.|.|| ||.||.|||.|...|||.||||||||.||||||| |.|
BPUM_2203___c 192 -ATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACG 240
BSNT_03683___ 236 CTGTCTGTCCAAATGG-TAAGCGCATTATCAT---CACCGGCGGAGAAGT 281
|||||.||||| .||||| |||.|||| .|.|||| .|.||
BPUM_2203___c 241 -----TGTCCTAATGGAAAAGCG-ATTGTCATTCAAAACGGC---CATGT 281
BSNT_03683___ 282 TAAGGTTGAACATTAA 297
.|||..|||| |||
BPUM_2203___c 282 GAAGCATGAA---TAA 294
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