Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03668 and BPUM_2191

See Amino acid alignment / Visit BSNT_03668 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:12
# Commandline: needle
#    -asequence dna-align/BSNT_03668___yqhG.1.24716.seq
#    -bsequence dna-align/BPUM_2191___yqhG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03668___yqhG-BPUM_2191___yqhG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03668___yqhG-BPUM_2191___yqhG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03668___yqhG
# 2: BPUM_2191___yqhG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 869
# Identity:     540/869 (62.1%)
# Similarity:   540/869 (62.1%)
# Gaps:         145/869 (16.7%)
# Score: 1512.0
# 
#
#=======================================

BSNT_03668___      1 -GTGAGACAGCAAGAGGTTCACGATTTTCTGCTGCGTTTTTTTCAAGCAA     49
                      ..||| ||||..||..|.||....|||||.||.|||||.|||||.||||
BPUM_2191___y      1 ATGGAG-CAGCGTGACATACATACCTTTCTTCTCCGTTTCTTTCAGGCAA     49

BSNT_03668___     50 A-CAGCTGCCAAATCGTCGATCAAGGCTTAGGCTATATGACAGTGCAGCT     98
                     | || .|||.|.||..|.||..||.|...|||..|||||||.||.||.||
BPUM_2191___y     50 ATCA-ATGCGACATACTAGAAGAAAGTACAGGACATATGACCGTACAACT     98

BSNT_03668___     99 TACAGTTGAAATGGACAAACAAATCATGAACCGCCCTTTCTACTGGCATT    148
                     .||..|.||.|||||||||..|||.||||||||||||||.||.|||||.|
BPUM_2191___y     99 GACCATCGAGATGGACAAATTAATTATGAACCGCCCTTTTTATTGGCACT    148

BSNT_03668___    149 GGCGCGAGAAGACAGGCGGTGATCCGAATCCAATGAAAATCACTTTTATT    198
                     |||.|||.||.||.||.||.|.||||.|.||...|.||.|.||..|.||.
BPUM_2191___y    149 GGCTCGAAAAAACTGGTGGAGTTCCGGAGCCGCGGCAATTGACCCTCATC    198

BSNT_03668___    199 ACAGATAAAGAAAATGCGCCAAAAGACC-TAGATGGTGAATTTATATATT    247
                     ||.|||.||.||||.|.| .|..|.||| |.||.|||||||||||..|.|
BPUM_2191___y    199 ACCGATCAAAAAAAAGTG-GATGATACCATTGAGGGTGAATTTATCCACT    247

BSNT_03668___    248 TTGGGGCCCCGCGTCTT-TTTCAAATATTTAAAGCTGTTAAACAAAATGG    296
                     ||||..||||.|| ||| ||||||||.|||.|||||||.|||||..|.||
BPUM_2191___y    248 TTGGCTCCCCTCG-CTTATTTCAAATTTTTGAAGCTGTCAAACAGCAGGG    296

BSNT_03668___    297 GAGATTTACCAGAATGTATGAGAAAATT---------------GAATCAG    331
                     ..||||||.|.|..|.||||| |.||.|               |||||||
BPUM_2191___y    297 CCGATTTATCCGTCTCTATGA-ACAAGTCACTCCGCTCATGAAGAATCAG    345

BSNT_03668___    332 CCGGAGCCAAAGTCCCACTTCAGCCTTGGCTTGGTATAAATGTCACGATT    381
                                .|..||||..||||||||||||||.|.|||||.|..|||
BPUM_2191___y    346 -----------ATTGCACTCGAGCCTTGGCTTGGTCTCAATGTGAAAATT    384

BSNT_03668___    382 TCATACCAGTCCGACAT-GAAA-AAGGATAAGTTATTATCACTAGGTCTT    429
                     ||.||.|  ||..|.|| |||| |||||||||.|.||.||||||||.|||
BPUM_2191___y    385 TCTTATC--TCGCAGATCGAAAGAAGGATAAGCTTTTGTCACTAGGACTT    432

BSNT_03668___    430 CACCTAGTCTCTGGAAC---GATAA----TTGAAGATTTTCAAAGCAAGC    472
                     ||.|||.|       ||   ||.||    |||||.|.||||||...||||
BPUM_2191___y    433 CATCTAAT-------ACGCGGAGAAGTCGTTGAACAATTTCAAGAAAAGC    475

BSNT_03668___    473 TG---AC---TCAGCTTTCACTGACATCACAAATATGTGACTATTGCTTC    516
                     ||   ||   |.||      |||.||||.|||||....||.||||||||.
BPUM_2191___y    476 TGGAAACCCGTGAG------CTGTCATCTCAAATTCCCGATTATTGCTTT    519

BSNT_03668___    517 ACCATTTCACCTATGATCAAACCAGAAAGCGGACTTAAGCGTATGGAAAA    566
                     ||.||.....|.|||||.||.||||||||||||.|.||.||..|      
BPUM_2191___y    520 ACGATGAGTACGATGATTAAGCCAGAAAGCGGAGTCAAACGGCT------    563

BSNT_03668___    567 CTATA-TTTCCAAATCCGCTATGCAGGAGC----CGTCC-----------    600
                     |||.| |||   |||          |||||    ||.||           
BPUM_2191___y    564 CTACAGTTT---AAT----------GGAGCATTACGCCCATGAAGAACCA    600

BSNT_03668___    601 ---GACTGGGCGGAACAG-GCGGTTAACAGGTGG-AAGAATGATATGACA    645
                        ||.|||||||.| || ||.|||.|.|..||| |||||      ||||
BPUM_2191___y    601 GATGATTGGGCGGTA-AGAGCTGTTCAAAAATGGAAAGAA------GACA    643

BSNT_03668___    646 TTGCTTGATAAGTTTTACGAGCA----TATAGAAGAAAAACCAGA-----    686
                     .||      ||.||||| .|.||    ||| ||||..|...||||     
BPUM_2191___y    644 CTG------AACTTTTA-AACCAATTTTAT-GAAGGGACTTCAGACACGT    685

BSNT_03668___    687 ----AGAATACCATCTAGAAAAACAGGCGCTGAAAACCTTGTATCAACCA    732
                         ||||||..|..||||||.|||.||.||.|||||.||.|||.|||||
BPUM_2191___y    686 CTGTAGAATATGAAATAGAAAGACAAGCACTCAAAACTTTATATGAACCA    735

BSNT_03668___    733 AAGATATCAG--TTGAAATTGAAAATGGCGGATTGTTTTATCT----GCA    776
                     |  |.|||||  ||...|||||||||||||||.|.||||| ||    |||
BPUM_2191___y    736 A--AAATCAGTCTTACGATTGAAAATGGCGGACTTTTTTA-CTTACAGCA    782

BSNT_03668___    777 AAATAATATTTCAAGCTAA    795
                     ||| ||.|  ..|.|||.|
BPUM_2191___y    783 AAA-AAGA--GGAGGCTGA    798


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03668 and BPUM_2191

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
