Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03655 and BPUM_2182
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:11
# Commandline: needle
# -asequence dna-align/BSNT_03655___yqhP.1.24716.seq
# -bsequence dna-align/BPUM_2182___yqhP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03655___yqhP-BPUM_2182___yqhP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03655___yqhP-BPUM_2182___yqhP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03655___yqhP
# 2: BPUM_2182___yqhP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 441
# Identity: 266/441 (60.3%)
# Similarity: 266/441 (60.3%)
# Gaps: 90/441 (20.4%)
# Score: 688.5
#
#
#=======================================
BSNT_03655___ 1 ATGAATCATCGTGTACAACCTATTATTGCTGT----ATTAATTGCGC--T 44
|||||||..||.|||||.|| ||||.| ||||.||.||| |
BPUM_2182___y 1 ATGAATCGCCGAGTACATCC------TGCTTTTACCATTATTTTCGCTTT 44
BSNT_03655___ 45 GGGAGCGTTCGGTTTCCTCTATGTGCTGGTAACCAATCCCGGAGAAATGG 94
.||.|..||.||.||..|.|||.|.||...|||.||||| .||
BPUM_2182___y 45 AGGCGTTTTGGGATTTGTGTATTTACTCACAACGAATCC--------AGG 86
BSNT_03655___ 95 CA--------AAAATGGCGGTAACCGTCA-TCGTGGCAGGTATCATT--- 132
|| |.||||..|.|| ||| |.||| ||||||
BPUM_2182___y 87 CAGACTTTTTACAATGCTGCTA----TCAGTTGTG------ATCATTGGA 126
BSNT_03655___ 133 ---ATT---TATTT--TATTGTGAAATATG--TAATGAATCGAAATGCGG 172
||| |.||| |||| .|.||| |.||||||||||...|.|
BPUM_2182___y 127 GCGATTGTGTTTTTCCTATT----TAGATGGCTGATGAATCGAAGAACTG 172
BSNT_03655___ 173 G--CAGCGAAGGAGCAGCCTTCA--AAAAAGCGGCGAAACAATC---GCG 215
| ||| ||| |||..|||.| ..|||||.|..|||||||| .||
BPUM_2182___y 173 GAACAG---AGG-GCAATCTTTATCGTAAAGCAGTCAAACAATCAAAACG 218
BSNT_03655___ 216 GCGC------CGGATGAAAGAACAAAAAGCAAAACACCGCGCCGGA--CA 257
.||| |.|...|| |.||||||..|||| |||.|| .|
BPUM_2182___y 219 TCGCTACCAGCAGCCTAA--ACCAAAAACGAAAA------GCCAGATGAA 260
BSNT_03655___ 258 TAAGGGACGTGTCAGCCACCTGCGAAGCGTTCCGAGCG-CCAGCAAGCCT 306
.|| .||.||||..||..||||||||||.||||..| ||| ||||.||
BPUM_2182___y 261 AAA---TCGGGTCACTCATTTGCGAAGCGTGCCGACTGACCA-CAAGTCT 306
BSNT_03655___ 307 AAGCCGATGATTCTCAAGAAAAAAAGCCAGACTCAGCTGACTGTTATAGA 356
|||||..|..|||||||.||.||||||||.||.|||.|.|||||.||.||
BPUM_2182___y 307 AAGCCCGTCCTTCTCAAAAAGAAAAGCCAAACACAGTTAACTGTGATTGA 356
BSNT_03655___ 357 AGGGAAAAAAAATAAAAAGAAAAACAGGGCGCTT-TTTTAA 396
|||.||.|||||.||||||||.||..|.|| ||| ||||||
BPUM_2182___y 357 AGGCAAGAAAAACAAAAAGAAGAATCGCGC-CTTGTTTTAA 396
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