Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03652 and BPUM_2179

See Amino acid alignment / Visit BSNT_03652 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:11
# Commandline: needle
#    -asequence dna-align/BSNT_03652___yqhS.1.24716.seq
#    -bsequence dna-align/BPUM_2179___aroQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03652___yqhS-BPUM_2179___aroQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03652___yqhS-BPUM_2179___aroQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03652___yqhS
# 2: BPUM_2179___aroQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 462
# Identity:     316/462 (68.4%)
# Similarity:   316/462 (68.4%)
# Gaps:          33/462 ( 7.1%)
# Score: 961.0
# 
#
#=======================================

BSNT_03652___      1 GTGCCTCATTTT-TTGATTTTGAACGGACCGAATGTTAACCGGCTTGGGA     49
                     .||||||||||| ||| |..||||.||.||.|||.|.||..|||||||.|
BPUM_2179___a      1 ATGCCTCATTTTCTTG-TACTGAATGGGCCCAATTTAAATAGGCTTGGCA     49

BSNT_03652___     50 GTCGTGAGCCTGAAGTATTCGGCCGCCAGACACTGACCGATATTGAAACA     99
                     ...|.|||||.|..||.|.|||..|..||||.|||||.|||.|.||.|||
BPUM_2179___a     50 AAAGAGAGCCGGCTGTTTACGGAAGTAAGACGCTGACAGATTTAGAGACA     99

BSNT_03652___    100 GATCTTTTTCAGTTTGCTGA---AGCCTTACATATCCAGCTCACTTTCTT    146
                     |||.|.||.||||||||.||   ||||   .||||||||.|.||.|||||
BPUM_2179___a    100 GATTTGTTCCAGTTTGCAGAAAGAGCC---AATATCCAGTTAACGTTCTT    146

BSNT_03652___    147 CCAGTCTAATCACGAAGGTGATTTGATAGATGCGATACATGAGGCTGAGG    196
                     .||.||.|||||.|||||.||||||||.|||||..|.||.|||||.||.|
BPUM_2179___a    147 TCAATCGAATCATGAAGGAGATTTGATTGATGCACTCCACGAGGCAGAAG    196

BSNT_03652___    197 AGCAATACAGCGGGA-TTGTTCTGAACCCCGGCGCCCTGAGTCATTATAG    245
                     |.||.||| |..||| |.||..|.|||||.||.||..|.|..||.||.||
BPUM_2179___a    197 AACAGTAC-GATGGAGTCGTGTTTAACCCGGGGGCTTTTACACACTACAG    245

BSNT_03652___    246 CTATGCGATCAGGGATGCTGTTTCAAGCATCAGTCT---TCCTGTGGTAG    292
                     ||||||..|.|||||||||.||.||||.||  .|||   ||| ||.||.|
BPUM_2179___a    246 CTATGCCCTAAGGGATGCTATTGCAAGTAT--TTCTTTATCC-GTCGTTG    292

BSNT_03652___    293 AGGTGCATTTATCAAAC--TTATACGCCAGGGAAGAATTCAGGCAACAGT    340
                     |.||.|||.|.||||||  |.|||.|  ||.||.||||||.|.||.||.|
BPUM_2179___a    293 AAGTACATATCTCAAACGTTCATAAG--AGAGAGGAATTCCGCCATCATT    340

BSNT_03652___    341 CGGTTATCGCTCCTGT-TGCGAAAGGGCAGATTGTCGGTCTTGGAGCTGA    389
                     |.||..|.|||||.|| ||| .|||||||.||.||.||||||||....||
BPUM_2179___a    341 CTGTACTTGCTCCAGTATGC-CAAGGGCAAATCGTTGGTCTTGGTTTAGA    389

BSNT_03652___    390 AGGCTACAAGCTTGCTGTTCGCTACTTATTAAGCCAG-CAAGGGGG---A    435
                     |||.||.||..|.||..||||    |||||.||..|| .|||||||   |
BPUM_2179___a    390 AGGGTATAAATTGGCGATTCG----TTATTTAGTGAGTGAAGGGGGAGCA    435

BSNT_03652___    436 GAATCAAGATGA    447
                     |.||||.||   
BPUM_2179___a    436 GTATCATGA---    444


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.