Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03649 and BPUM_2176

See Amino acid alignment / Visit BSNT_03649 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:11
# Commandline: needle
#    -asequence dna-align/BSNT_03649___yqhV.1.24716.seq
#    -bsequence dna-align/BPUM_2176___yqhV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03649___yqhV-BPUM_2176___yqhV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03649___yqhV-BPUM_2176___yqhV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03649___yqhV
# 2: BPUM_2176___yqhV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 293
# Identity:     198/293 (67.6%)
# Similarity:   198/293 (67.6%)
# Gaps:          22/293 ( 7.5%)
# Score: 592.0
# 
#
#=======================================

BSNT_03649___      1 ATGAA--ATTTTTACTTGGAAAT--ATCAAT---TCTACTGTTTTAACAA     43
                     |||||  |||||..|..||..||  |||.||   || .|||      |.|
BPUM_2176___y      1 ATGAAACATTTTCTCCCGGGCATCCATCCATCAGTC-GCTG------CGA     43

BSNT_03649___     44 TGGC-GGGATTACGAG--TTTTATCCTCTATGATTGAGCTGACGGCAGCA     90
                     |||| ||.||   |||  |||||||..|...||||||.||||||||.||.
BPUM_2176___y     44 TGGCAGGCAT---GAGGTTTTTATCGGCAGCGATTGAACTGACGGCCGCC     90

BSNT_03649___     91 ATTGTCATGCTTGTGACCAACGATGTCCGGAAGGCGGTTGTGGTTAACAG    140
                     |||.||||..|.||.||.||.||.||.||.||.||||||||..|.||.||
BPUM_2176___y     91 ATTCTCATTTTAGTCACAAATGACGTTCGAAAAGCGGTTGTCATCAATAG    140

BSNT_03649___    141 CATTCTCGCTATTGTCGGTCCGTTGATTTTTATCATTACAATGACTGTCG    190
                     .||..|.||.||..|.||.|||.|.||||||||.||.||||||||..|.|
BPUM_2176___y    141 TATATTGGCGATCATTGGACCGCTCATTTTTATTATCACAATGACGATTG    190

BSNT_03649___    191 GAATCTACCAAATTGCCGGGCAGCTTTCGTATGCAAAGCTGATTCTGATT    240
                     |||||||.|||||.||.||||||.|.||.|||||.|||||..|..|.|||
BPUM_2176___y    191 GAATCTATCAAATCGCAGGGCAGTTATCCTATGCCAAGCTCCTCTTTATT    240

BSNT_03649___    241 TTTACGGGTGTTGTCTTGATT-TTGGCGGGTGTTCATAAATAA    282
                     ||.|..|||||..||||.||| |||..||| .||.||||.|.|
BPUM_2176___y    241 TTCATTGGTGTCTTCTTTATTCTTGTTGGG-ATTTATAAGTGA    282


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