Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03648 and BPUM_2175
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:10
# Commandline: needle
# -asequence dna-align/BSNT_03648___spoIIIAA.1.24716.seq
# -bsequence dna-align/BPUM_2175___spoIIIAA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03648___spoIIIAA-BPUM_2175___spoIIIAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03648___spoIIIAA-BPUM_2175___spoIIIAA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03648___spoIIIAA
# 2: BPUM_2175___spoIIIAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 998
# Identity: 628/998 (62.9%)
# Similarity: 628/998 (62.9%)
# Gaps: 148/998 (14.8%)
# Score: 1793.5
#
#
#=======================================
BSNT_03648___ 1 TTGAATGAAATCGCTGAG----------GTTCTCCC-----TGATT--CC 33
|.||.||| .||||||| .|||| .|
BPUM_2175___s 1 ----------TTGCGGAGTTTGTTGGATATTCTCCCGCACGCGATTGGAC 40
BSNT_03648___ 34 ATGAA---AAACGCCCTTTCTGAAATACCGGAACAACAATGGCTGGAAAT 80
|.||| |.|| |.||.||| |||..|.|||||....||||
BPUM_2175___s 41 AAGAACTTAGAC-----TGCTAAAA-----GAAGCAGAATGGGATCAAAT 80
BSNT_03648___ 81 CGAAGAAGTCAGAATT----CGGATCAACCGCCCTGTTGAATTGATTCGA 126
.||||||.|..|.||| ||||| ||.|||.|||||||.||.|.|
BPUM_2175___s 81 AGAAGAAATTCGCATTCGCACGGAT----CGTCCTATTGAATTAATGCAA 126
BSNT_03648___ 127 AGAGGACAACCTG---TTTATTTGTCCTATGCGGGCAC------GGCCGA 167
|||||| ||.|.| |||.|| ||.||| ||| || .||
BPUM_2175___s 127 AGAGGA-AAGCCGCGCTTTCTT--TCTTAT-----CACACAACAGG-AGA 167
BSNT_03648___ 168 GGATG---CCCATCTGATCCTGAGCCGGCTCAGCAACTATAGTATGTATA 214
.|||| |.||.|| || |..||.||||.|||||.||.||.|||||.|
BPUM_2175___s 168 AGATGCGTCACAGCT-AT--TAGGCAGGCTGAGCAATTACAGCATGTACA 214
BSNT_03648___ 215 CACTTGAAGAAGAGCTGAAGAAAGGGTATGTCACGATCAGAGGCGGCCAC 264
||||||||||.|||||.|||.||||.||..||||.||...||||||.||.
BPUM_2175___s 215 CACTTGAAGAGGAGCTAAAGCAAGGCTACATCACCATTTCAGGCGGACAT 264
BSNT_03648___ 265 AGAGTCGGACTGGCGGGCAGAGTCATTACG--GAAAACGGAGGTGTGAAA 312
.|.||.|||||.||.||||..||.|| || |||.||||...|||.|||
BPUM_2175___s 265 CGGGTAGGACTTGCAGGCAAGGTGAT--CGTTGAACACGGCATTGTTAAA 312
BSNT_03648___ 313 GGCCTCCGTGACATCGCATCTTTTAATATACGAATTGCCCGGCAAAAG-- 360
||..|..|.||.|||.|.||.||||||||.||.|| .|||||||
BPUM_2175___s 313 GGATTGAGAGATATCTCTTCATTTAATATCCGCAT-----CGCAAAAGAA 357
BSNT_03648___ 361 ---CTGGGGATTGCGGAGCCGCTGCTTCCATACTTATATCA-AAACAGCT 406
.|.|||||||||...||..|.|||||.||.||||||.| .|.|| ||
BPUM_2175___s 358 AAAGTCGGGATTGCGCTCCCCTTTCTTCCCTATTTATATGACGAGCA-CT 406
BSNT_03648___ 407 GGCTG-AATACGCTGATTATCGGACCGCCCCAAACCGGCAAAACAACACT 455
|| || |||||.|||||.|||||.||.||.|||||.||.|||||.|||.|
BPUM_2175___s 407 GG-TGCAATACACTGATCATCGGTCCACCGCAAACAGGGAAAACGACATT 455
BSNT_03648___ 456 TCTCCGGGACCTTGCGAGGCTCTCAAGCACCGGCAAAAAAAACATGCTGC 505
..|.|||||..|.||.||.||..|.||.||.||.|.||||..|||.|..|
BPUM_2175___s 456 ATTGCGGGATATAGCAAGACTTGCTAGTACGGGTACAAAAGCCATTCCTC 505
BSNT_03648___ 506 CCGTAAAGACAGGGATCGTCGATGAACGGTCAGAGATTGCCGGATGTCTT 555
|...|||.|||||.||..|.|||||.||.|||||.||.||.||.||..|.
BPUM_2175___s 506 CTAAAAAAACAGGCATTATAGATGAGCGTTCAGAAATCGCTGGGTGCATA 555
BSNT_03648___ 556 CGCGGTATTCCGCAGCATCAATTTGGTCAGAGAATTGACGTGTTAGACGC 605
.|.||..|.||||||||.||.|||||.||..|..|.||.|||.|.||.||
BPUM_2175___s 556 AGAGGGGTGCCGCAGCACCAGTTTGGACACCGGGTGGATGTGCTCGATGC 605
BSNT_03648___ 606 CTGTCCAAAAGCTGAAGGGC-TGATGATGATGATTCGATCCATGAGCCCT 654
.||||||||||||| ||||| ||||||||||||||||.||.|||||.||.
BPUM_2175___s 606 ATGTCCAAAAGCTG-AGGGCTTGATGATGATGATTCGGTCTATGAGTCCA 654
BSNT_03648___ 655 GAGGTGATGATTGTCGATGAAATCGG-----GCGTATGGAAGATACAGAT 699
|||||.||||||||||||||.||||| ||| .|||.| |.|||
BPUM_2175___s 655 GAGGTCATGATTGTCGATGAGATCGGAAAAAGCG--AGGATG-TGCAG-- 699
BSNT_03648___ 700 GCACTTCTGGAGGCGCTGCATGCCGGTGTTTCAG--TAATCGTATCGGCG 747
||||||.|.||.|||.|.|||||.||.| |||| |.|||||.||.|..
BPUM_2175___s 700 GCACTTTTAGAAGCGATTCATGCTGGGG--TCAGCATTATCGTTTCCGTT 747
BSNT_03648___ 748 CATGGCTGGAGTATATCCGAC---CT----GATG-----AAGCGGCCTTC 785
||||||| || || |||| ||.||.||.||
BPUM_2175___s 748 CATGGCT------------ACTCACTAGAAGATGTGTATAAACGTCCATC 785
BSNT_03648___ 786 ATTGAAGCGTTTGTGGGAAGAAAGAGC-------CTTTGACCGCTATTTG 828
||||||||..||.||| |||| .|||||.||.|||.|.
BPUM_2175___s 786 ATTGAAGCCGTTATGG-------GAGCTTCGCGTGTTTGAACGTTATGTT 828
BSNT_03648___ 829 GAATTATCAAGAGCAA--AAGGGCCGGGCACAGTGAGCCAAATTTATGAC 876
|||||| ||..|.|| |.||.||.|||||..|..|..|.||.|||||.
BPUM_2175___s 829 GAATTA--AATCGTAAGGACGGTCCCGGCACGATCGGAAAGATATATGAT 876
BSNT_03648___ 877 AAAGACGGAAATGTGCTGTCTAGGACGACGGGCGTGAAAACATGCTGA 924
.||||||||.|.|.|.||....|||.|..|||.|||.|...|||.|.|
BPUM_2175___s 877 CAAGACGGACAAGAGATGAAATGGAGGCGGGGAGTGGACGTATGTTAA 924
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