Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03645 and BPUM_2172
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:10
# Commandline: needle
# -asequence dna-align/BSNT_03645___spoIIIAD.1.24716.seq
# -bsequence dna-align/BPUM_2172___spoIIIAD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03645___spoIIIAD-BPUM_2172___spoIIIAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03645___spoIIIAD-BPUM_2172___spoIIIAD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03645___spoIIIAD
# 2: BPUM_2172___spoIIIAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 404
# Identity: 239/404 (59.2%)
# Similarity: 239/404 (59.2%)
# Gaps: 97/404 (24.0%)
# Score: 869.5
#
#
#=======================================
BSNT_03645___ 1 TTGCAGATTGACATTGTTCAAATTGTAGGTTTAGGGCTGATCGCCACCTT 50
BPUM_2172___s 0 -------------------------------------------------- 0
BSNT_03645___ 51 CCTTTCTTTAATTGTAAAAGAACAAAAGCCGACTTTTGCGTTTTTAATCG 100
.||| |.|
BPUM_2172___s 1 -----------------------------------ATGC--------TTG 7
BSNT_03645___ 101 TCGTTTTTGCCGGATGTGCCATTTTTCTTTATTTGGTAGACCAAATCTAC 150
|.||||||.|.||.||||..||.|||||.|||||..||||.|||||.||.
BPUM_2172___s 8 TTGTTTTTACAGGGTGTGTGATCTTTCTCTATTTAATAGATCAAATTTAT 57
BSNT_03645___ 151 GACATTAT-TCGAATGATAGAAAAAATTGCGATTAATGCAAATGTCAACA 199
|.|||||| ||| ||||||||||||||||||...|.|||...||||||.|
BPUM_2172___s 58 GCCATTATCTCG-ATGATAGAAAAAATTGCGGCAAGTGCCGGTGTCAATA 106
BSNT_03645___ 200 TGGTCTATGTTGAAACCATTTTAAAGATTATCGGAATCGCCTATATTGCT 249
||...||||||||||||||||||||.|||||.||.||.|||||||||||.
BPUM_2172___s 107 TGAAGTATGTTGAAACCATTTTAAAAATTATTGGTATTGCCTATATTGCG 156
BSNT_03645___ 250 GAATTCGGGGCACAGCTCACAAAAGATGCCGGTCAAGGAGCCATCGCCTC 299
||||||||.||.|||||.|||||||||||.||.|||||.|||||.||.||
BPUM_2172___s 157 GAATTCGGCGCCCAGCTGACAAAAGATGCTGGACAAGGCGCCATTGCATC 206
BSNT_03645___ 300 GAAAATAGA-ATTGGCGGGGAAAATTTTAATACTCGTAATGGCTGTGCCT 348
.|||||||| .||||| ||.||||||.|.||..|.||.|||||.||.||.
BPUM_2172___s 207 AAAAATAGAGCTTGGC-GGCAAAATTCTCATCTTGGTCATGGCAGTCCCC 255
BSNT_03645___ 349 ATTTTAACCGTCATTATCGAAACGATTCTCGGACTTATACCTTCTATGTC 398
||||||||.|||||.||.||.||.||..|.||..|.||.||.||.|||.|
BPUM_2172___s 256 ATTTTAACAGTCATCATTGAGACCATCTTAGGTATGATCCCGTCCATGAC 305
BSNT_03645___ 399 ATAA 402
.|||
BPUM_2172___s 306 GTAA 309
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