Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03641 and BPUM_2170
See
Amino acid alignment /
Visit
BSNT_03641 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:10
# Commandline: needle
# -asequence dna-align/BSNT_03641___spoIIIAF.1.24716.seq
# -bsequence dna-align/BPUM_2170___spoIIIAF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03641___spoIIIAF-BPUM_2170___spoIIIAF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03641___spoIIIAF-BPUM_2170___spoIIIAF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03641___spoIIIAF
# 2: BPUM_2170___spoIIIAF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 719
# Identity: 428/719 (59.5%)
# Similarity: 428/719 (59.5%)
# Gaps: 184/719 (25.6%)
# Score: 1240.0
#
#
#=======================================
BSNT_03641___ 1 ATGAGTTTTTTAACGGAATGGCTTACCACCATCGTGTTGTTTATCCTATT 50
.||||||||.|.|||||||||.|.||.|..||..|..|.||||||.||||
BPUM_2170___s 1 TTGAGTTTTCTCACGGAATGGATCACAAGTATTATTCTCTTTATCTTATT 50
BSNT_03641___ 51 TGCAATTGTGATTGATATGCTGCTGCCGAGCTCCAGCATGCAAAAGTACG 100
|||.|||||.||||||.|.|||||.||.|..||.|||||||||||.||.|
BPUM_2170___s 51 TGCGATTGTCATTGATCTTCTGCTTCCTAATTCAAGCATGCAAAAATATG 100
BSNT_03641___ 101 CAAAAATGGTAGTCAGCCTGCTATTGATTGTCGTCATGCTTACGCCGATT 150
|.||||||||.||||||||.||.||||||||.||.|||||.|..||||||
BPUM_2170___s 101 CCAAAATGGTCGTCAGCCTCCTGTTGATTGTGGTGATGCTCAATCCGATT 150
BSNT_03641___ 151 TTTAAACT---TTTCAAGACAGACCCCGAAGTCATCTTTGAATACCTCAC 197
||| .|| |||| .|.|||||||.|| .||..||| ||.|
BPUM_2170___s 151 TTT--GCTTTATTTC-GGGCAGACCCTGA--CCAAATTT-------TCTC 188
BSNT_03641___ 198 AAAA------AACGGGCAG------TCAGAGTCTGCCGACATAAAAAATC 235
|.|| ||.|||.|| .||.||||.|..||.||||||||||
BPUM_2170___s 189 AGAATTGATGAAGGGGAAGGAAGAAGCACAGTCAGAAGAAATAAAAAATC 238
BSNT_03641___ 236 AAATCAATTCAAAAAAAATAGAAATACAAGCTTCCCAGCGCGCATATATT 285
|.||.||||.|.||||||.||||||||||||.||.|||||.|||||||||
BPUM_2170___s 239 AGATGAATTTAGAAAAAAAAGAAATACAAGCCTCTCAGCGTGCATATATT 288
BSNT_03641___ 286 CTAGAAG-AAATGGCTGTCCAACT--AAAAAAG---AAA----------G 319
.|| ||| |||||||||||||||| ||||||| ||| |
BPUM_2170___s 289 TTA-AAGCAAATGGCTGTCCAACTAGAAAAAAGCGCAAAGGAGCCACTGG 337
BSNT_03641___ 320 CGGAGGAGAGATTCAGTCATGATGAATATAAA----GTAGGCCGCATCAA 365
.|.|||||||.| |.||| ||.|| |||| |
BPUM_2170___s 338 AGAAGGAGAGCT---------ACGAA-ATGAAACACGTAG---------A 368
BSNT_03641___ 366 ACTCACGGCAGGAGAAAAG---GTAGATTCAGAA-------GAGGAT--- 402
|.|...|||||..|||.|| .|.|| |||||| |.||||
BPUM_2170___s 369 AGTGTTGGCAGATGAAGAGCACCTGGA-TCAGAATATGGAGGCGGATCAA 417
BSNT_03641___ 403 ------ATTAAAACAATCAGCGTGTATATGGCCCCG-TC--------TTC 437
||.|||.||.| |.|..||||| || |.|
BPUM_2170___s 418 TTTCGCATCAAAGCAGT---------TCTTTCCCCGCTCACAGGTGATGC 458
BSNT_03641___ 438 TGAAAAAACGGT-CCAAACGGTCGCGCCGGTCCACATTGA----TACAGA 482
||.|.||||||| .|||| |||..||||||| |.|||
BPUM_2170___s 459 TGTAGAAACGGTGGCAAA----------GGTGGACATTGATCTCTCCAG- 497
BSNT_03641___ 483 TCATGCATACGTAACAAAAG-----AAGCAGCCGAA--------CAAAAA 519
.|||||| |||| ||.||| ||||.|
BPUM_2170___s 498 -------------GCAAAAGGAGAAAAGC-GCTGAATCTTCTAGCAAAGA 533
BSNT_03641___ 520 GA-------AGCCAAACAGATACAAACGCAGCTCGCGGACATTTGGGAAA 562
|| .|..|||.||| ||||.|||||..||||| ||
BPUM_2170___s 534 GATCAAGAGGGTGAAAGAGA---------AGCTTGCGGATGTTTGG--AA 572
BSNT_03641___ 563 T-CGGAAG---TGAGAAAATTACGGTTCATATGGAAGGCGGGGAGAGTGT 608
| || || ||||.|.|||.||.|..|.||.|| ||||| |||.
BPUM_2170___s 573 TACG--AGTCCTGAGCACATTGCGCTGAACATTGA-----GGGAG-GTGA 614
BSNT_03641___ 609 CG--GCA----ATGAATAA 621
|| ||| ||||||||
BPUM_2170___s 615 CGCAGCAGATCATGAATAA 633
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.