Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03632 and BPUM_2166
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:10
# Commandline: needle
# -asequence dna-align/BSNT_03632___accC.1.24716.seq
# -bsequence dna-align/BPUM_2166___accC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03632___accC-BPUM_2166___accC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03632___accC-BPUM_2166___accC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03632___accC
# 2: BPUM_2166___accC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1386
# Identity: 1041/1386 (75.1%)
# Similarity: 1041/1386 (75.1%)
# Gaps: 69/1386 ( 5.0%)
# Score: 3895.5
#
#
#=======================================
BSNT_03632___ 1 ATGATTAAAAAGCTATTGATCGCCAACAGAGGAGAAATTGCTGTCAGAAT 50
|||||||||||||||||.||.||.||||||||||||||.||.||.|||||
BPUM_2166___a 1 ATGATTAAAAAGCTATTAATTGCAAACAGAGGAGAAATCGCAGTTAGAAT 50
BSNT_03632___ 51 CATCAGAGCCTGCAGAGAGCTCGGAATTGAGACTGTCGCTGTTTATTCAG 100
.|||.|.||.||.|.||||||.||||||||.||.||.||.||.|.|||.|
BPUM_2166___a 51 TATCCGCGCTTGTAAAGAGCTTGGAATTGAAACAGTTGCGGTATTTTCTG 100
BSNT_03632___ 101 AAGCTGATAAAGATGCCCTTCATGTTCAAATGGCCGATGAAGCTTTTTGT 150
||||.|||...|||||.|||||||||||||||||.||||||||.|.|||.
BPUM_2166___a 101 AAGCGGATCGCGATGCGCTTCATGTTCAAATGGCTGATGAAGCATATTGC 150
BSNT_03632___ 151 ATCGGACCGAAAGCATCAAAAGACAGCTATTTAAACGTTACAAATATTGT 200
||||||||||..||.||||||||.||.||||||||.||.||.||||||||
BPUM_2166___a 151 ATCGGACCGACTGCTTCAAAAGATAGTTATTTAAATGTCACGAATATTGT 200
BSNT_03632___ 201 GAGTGTTGCAAAGCTGACTGGCACGGACGCCATTCATCCGGGATACGGAT 250
.|||||.|||||..|.||.||.||.||.|||||||||||.||||||||.|
BPUM_2166___a 201 CAGTGTAGCAAAATTAACAGGAACAGATGCCATTCATCCAGGATACGGCT 250
BSNT_03632___ 251 TTTTAGCTGAAAATGCTGATTTCGCTGAATTATGTGAAGAAGTG-AATGT 299
|..|.|||||||||||.||.||.||.||..|.||.||.||| || ||.||
BPUM_2166___a 251 TCCTTGCTGAAAATGCAGACTTTGCAGAGCTTTGCGAGGAA-TGCAACGT 299
BSNT_03632___ 300 CACGTTTGTCGGCCCGAGCGCTGAC-GCCATTTCAAAAATGGGAACAAAA 348
.|..|||||.||.|| |.|.|.|.| ||.|||||.|||||||||||||||
BPUM_2166___a 300 TATCTTTGTTGGACC-AACTCCGTCAGCGATTTCCAAAATGGGAACAAAA 348
BSNT_03632___ 349 GACGTTGCGCGGGAAACGATGAAACAGGCCGGCGTGCCAATCGTACCGGG 398
||.||.||..|||||||.|||||..|.||.|||||.||.||.||.||.||
BPUM_2166___a 349 GATGTCGCAAGGGAAACAATGAAGGACGCTGGCGTTCCGATTGTTCCTGG 398
BSNT_03632___ 399 TTCACAGGGAATTATAGAAAATGTGGAAGAAGCGGTTTC----GCTTGCT 444
|||.||.||||||.||.||.||.|.||.||.||.||||| || .||.
BPUM_2166___a 399 TTCTCAAGGAATTGTAAAAGATCTTGATGATGCTGTTTCAACAGC-AGCA 447
BSNT_03632___ 445 AATGAAATTGGGTATCCTGTAATTATAAAAGCCACCGCAGGCGGAGGCGG 494
|.| ||||||||||||||.|||||||||||.||.||.|||||.||.||
BPUM_2166___a 448 AGT---ATTGGGTATCCTGTGATTATAAAAGCAACTGCCGGCGGCGGTGG 494
BSNT_03632___ 495 AAAAGGAATTAGGGTTGCTCGCACTGAAGAGGAACTGATTAATGGCATTA 544
.||||||||..|.||.|||||.|..|||||.||.||.|||||.||..|.|
BPUM_2166___a 495 TAAAGGAATCCGTGTCGCTCGTAACGAAGAAGAGCTCATTAACGGTGTCA 544
BSNT_03632___ 545 AGATTACACAGCAGGAAGCGGCAACTGCA----TTCGGAAATCCAGGTGT 590
..||.||.|||||||||||.|| ||| ||.||.||.||.||.||
BPUM_2166___a 545 CCATCACGCAGCAGGAAGCAGC----GCAAAACTTTGGTAACCCTGGCGT 590
BSNT_03632___ 591 ATACATCGAAAAATACATAGAAGATTTTCGCCACGTTGAGATCCAAGTGC 640
.||..|.|||||||.|||.|||||.|||.|.|||||.||.||||||||||
BPUM_2166___a 591 CTATTTAGAAAAATTCATTGAAGACTTTAGACACGTGGAAATCCAAGTGC 640
BSNT_03632___ 641 TTGCTGATAACTACGGAAATACGATCCATTTGGGCGAACGCGACTGCTCG 690
||||.|||.|..|.||..||||.||.|||||.||.||.||.||.|||||.
BPUM_2166___a 641 TTGCAGATCAGCATGGTCATACCATTCATTTAGGAGAGCGTGATTGCTCA 690
BSNT_03632___ 691 ATCCAAAGACGCCTGCAAAAGCTTTTGGAAGAATCACCATCTCCTGCCCT 740
|||||||||.|..|||||||||||.|.||||||.|.|||||.||.||.||
BPUM_2166___a 691 ATCCAAAGAAGAATGCAAAAGCTTCTTGAAGAAACGCCATCACCAGCTCT 740
BSNT_03632___ 741 TGATTCAGAAATCAGGGAGCAAATGGGAGATGCAGCGGTAAAGGCTGCAA 790
..||.||||.|||.|.||.||||||||.||.||.||.|||||.||||||.
BPUM_2166___a 741 AAATGCAGACATCCGTGAACAAATGGGTGAAGCGGCTGTAAAAGCTGCAG 790
BSNT_03632___ 791 AAGCGGTTGGCTATACAGGTGCTGGAACAGTTGAATTTATCTATGACTAC 840
||||.||||..|||||.||||||||||||||.|||||.||.|||||.||.
BPUM_2166___a 791 AAGCTGTTGAATATACTGGTGCTGGAACAGTCGAATTCATTTATGATTAT 840
BSNT_03632___ 841 AATGAACAGCGCTATTACTTCATGGAAATGAACACGAGAATTCAGGTAGA 890
||||||.||...|..|||||||||||||||||.||..|.|||||.|||||
BPUM_2166___a 841 AATGAAGAGAAGTTCTACTTCATGGAAATGAATACCCGTATTCAAGTAGA 890
BSNT_03632___ 891 GCACCCAGTCACAGAAATGGTGACGGGAACTGACCTGATCAAGGAACAAA 940
|||.||.||.|||||||||||.||.||...|||..|||||||.|||||||
BPUM_2166___a 891 GCATCCTGTAACAGAAATGGTCACAGGTGTTGATTTGATCAAAGAACAAA 940
BSNT_03632___ 941 TCAAAGTGGCATCAGGAATGGAACTGAGCCTCAAG------------CAA 978
|.|||||||||||||| |||| ||| |||
BPUM_2166___a 941 TTAAAGTGGCATCAGG--------TGAG----AAGCTTTCTCTTACACAA 978
BSNT_03632___ 979 GAGGATGTTGAATTTGAAGGCTGGGCCATCGAATGCCGAATCAACGCAGA 1028
||||||||||.||.||||||.|||||.|||||||||||.||.||.|||||
BPUM_2166___a 979 GAGGATGTTGTATATGAAGGATGGGCAATCGAATGCCGTATTAATGCAGA 1028
BSNT_03632___ 1029 AAACCCA-AGTAAAAATTTCATGCCGTCACCTGGTGAAATTAAAATGTAC 1077
.|||||| || |||||.||||||||.|||.|||||||||||||||||||.
BPUM_2166___a 1029 GAACCCAGAG-AAAAACTTCATGCCATCAGCTGGTGAAATTAAAATGTAT 1077
BSNT_03632___ 1078 CTGCCTCCTGGCGGTCTTGGTGTCCGTGTCGATTCAGCTGCGTACCCTGG 1127
||.||.||.|||||.||.||.||.|||||.|||||.||.||.||.||.||
BPUM_2166___a 1078 CTTCCGCCAGGCGGCCTAGGAGTTCGTGTTGATTCTGCCGCTTATCCGGG 1127
BSNT_03632___ 1128 CTATTCCATCCCACCGTACTATGACAGCATGATTGCAAAGGTCATCACAT 1177
.|||...||.||.||.||.||.||.||.||||||||||||||.|||||||
BPUM_2166___a 1128 TTATGTGATTCCGCCATATTACGATAGTATGATTGCAAAGGTGATCACAT 1177
BSNT_03632___ 1178 ACGGAAAAACGAGGGATGAAGCGATTGCCCGCATGAAGCGCGCATTGAGC 1227
|.||.||.|||||.||.|||||||||||..|.|||||.||||| ||
BPUM_2166___a 1178 ATGGTAAGACGAGAGAAGAAGCGATTGCGAGAATGAAACGCGC-----GC 1222
BSNT_03632___ 1228 -----GAATTCGTCATCGAAGGCATTGAGACAACAATCCCTTTCCATTTA 1272
|||||||||||.|||||..|..|.|||||.|||||.||||||.||
BPUM_2166___a 1223 TTCAAGAATTCGTCATTGAAGGAGTCTACACAACGATCCCATTCCATCTA 1272
BSNT_03632___ 1273 AAACTGCTTGAACACGAAACATTTGTGAGCGGAGAGTTTAATACGAAATT 1322
|.|.|||||||.||.|||||||||||||||||..|.|||||||||||.||
BPUM_2166___a 1273 AGATTGCTTGAGCATGAAACATTTGTGAGCGGTAATTTTAATACGAAGTT 1322
BSNT_03632___ 1323 TTTAGAAACAT-----ATGATGTAATGGGCTCATAA 1353
||||||||||| ||.|||.| ||||
BPUM_2166___a 1323 TTTAGAAACATACCAAATCATGAA--------ATAA 1350
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