Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03624 and BPUM_2163

See Amino acid alignment / Visit BSNT_03624 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_03624___folD.1.24716.seq
#    -bsequence dna-align/BPUM_2163___folD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03624___folD-BPUM_2163___folD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03624___folD-BPUM_2163___folD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03624___folD
# 2: BPUM_2163___folD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 868
# Identity:     665/868 (76.6%)
# Similarity:   665/868 (76.6%)
# Gaps:          32/868 ( 3.7%)
# Score: 2520.5
# 
#
#=======================================

BSNT_03624___      1 ATGACTGCAACAATCATCGACGGAAAAGAAACGGCTAGAGAAAAACGCGA     50
                     |||||.||||||||||||||.||.||||||||.||.|.||||||.||.||
BPUM_2163___f      1 ATGACAGCAACAATCATCGATGGGAAAGAAACAGCAAAAGAAAAGCGTGA     50

BSNT_03624___     51 ACAATTGGCAAAAGAGGTAGAAGAGCTTAAAAAGCAAGGCGTCACTCCCG    100
                     .|||||.||||||||.|||||||||||.|||.|..||||.|||||.||.|
BPUM_2163___f     51 GCAATTAGCAAAAGAAGTAGAAGAGCTAAAACAAAAAGGTGTCACACCTG    100

BSNT_03624___    101 GACTGGCGGTTATTTTGATTGGAGATGATCCTGCTTCTCACTCTTACGTG    150
                     |.||.||.||||||.|.||.||.||||||||.|||||.|..||||||||.
BPUM_2163___f    101 GTCTTGCCGTTATTCTAATCGGTGATGATCCGGCTTCACTTTCTTACGTA    150

BSNT_03624___    151 CGAGGAAAGAAAAAAGCGGCAGAAACAATGGGAATGAATTTCAAGCTCGA    200
                     ||.||||||||||||||.||||||.|||||||.|||.|||||.||||.||
BPUM_2163___f    151 CGCGGAAAGAAAAAAGCAGCAGAAGCAATGGGGATGCATTTCCAGCTAGA    200

BSNT_03624___    201 TCAATTTGACAGCAGCCTC----ACAGAAGCTGAACTGCTTTCCA--TTA    244
                     |||.||    ||..||.||    |||||||..|||.|||||  ||  |.|
BPUM_2163___f    201 TCATTT----AGATGCTTCTTTAACAGAAGAAGAATTGCTT--CAGCTCA    244

BSNT_03624___    245 TTGATCAATATAA--CCAA-GACCCTGAGTTTCATGGCATTCTCGTTCAG    291
                     |||||||.||.||  |.|| ||   |.|.||.||.||.|||||.||||||
BPUM_2163___f    245 TTGATCAGTACAATGCGAACGA---TCAATTCCACGGGATTCTTGTTCAG    291

BSNT_03624___    292 CTTCCGCTCCCAGACCATATTTCTGAAAAAGCGGTGATCGAACGTATCTC    341
                     |||||.||.|||.|.|||||||||||||||||.|||||.||||||||.||
BPUM_2163___f    292 CTTCCACTGCCAAAACATATTTCTGAAAAAGCTGTGATTGAACGTATTTC    341

BSNT_03624___    342 CCCTGATAAAGATGTAGACGGTTTTCATCCGTTAAACGTAGGGAAAATGC    391
                     .|||||.||||||||.||.|||||.|||||..|.||..|.||||||||||
BPUM_2163___f    342 ACCTGAAAAAGATGTTGATGGTTTCCATCCTCTGAATATCGGGAAAATGC    391

BSNT_03624___    392 TGCTTGGCGAAGATACGTTTCTTCCTTGCACGCC-TCATGGAATTGTTGA    440
                     |.|||||.|||||.||.||.|||||.|||||.|| .|| ||.||||||||
BPUM_2163___f    392 TTCTTGGGGAAGACACATTCCTTCCATGCACACCAGCA-GGGATTGTTGA    440

BSNT_03624___    441 GCTTTTGAAGAAAA------TCAATATTGACCTTTCCGGTAAAGAGGTTG    484
                     ..|..|.||.||||      |||      |||||||.||.|||||.||.|
BPUM_2163___f    441 ATTACTCAACAAAACGGGTGTCA------ACCTTTCTGGAAAAGAAGTCG    484

BSNT_03624___    485 TTGTAGTCGGCCGAAGCAACATTGTCGGCAAACCTGTCGGCCAGCTTTTA    534
                     ||||.||.||.||.|||||.||||||||.|||||.||.||.||..|..|.
BPUM_2163___f    485 TTGTTGTTGGACGCAGCAATATTGTCGGTAAACCGGTAGGACAATTGCTG    534

BSNT_03624___    535 TTAAATGAAAACGCGACGGTTACTTACTGTCATTCAAGAACAGAAAATAT    584
                     |||||.||||||||.|||||||||||.||||||||||||||||..|||||
BPUM_2163___f    535 TTAAACGAAAACGCAACGGTTACTTATTGTCATTCAAGAACAGCGAATAT    584

BSNT_03624___    585 TACTGAACATACGAAAAAAGCGGACATCCTGGTGGTGGCAGTCGGCAGAG    634
                     |.|.|||||||||...||||||||.||..|.||.||.||.|||||..|||
BPUM_2163___f    585 TTCAGAACATACGTTGAAAGCGGATATTTTAGTTGTTGCCGTCGGTCGAG    634

BSNT_03624___    635 CCAACTTCATCAGTGCAGACCAGATCAAAGAGGGCGCTGTTGTCATTGAC    684
                     |.|||||.||.|..||.|||||.||.|||||.||||||.||||.|||||.
BPUM_2163___f    635 CAAACTTTATTAAAGCTGACCAAATTAAAGAAGGCGCTATTGTGATTGAT    684

BSNT_03624___    685 GTCGGCGTTAACCGTCTGGAAAACGGAAAGCTTTGCGGAGACGTTGAATT    734
                     ||.||.||.||.|||.|.||.|.|||.||||||...|||||.|||||.||
BPUM_2163___f    685 GTAGGAGTCAATCGTTTAGATACCGGGAAGCTTGTTGGAGATGTTGATTT    734

BSNT_03624___    735 TGAAGGGGCAAAGGAAAAAGCGTCCTTCATCACGCCGGTTCCGGGCGGAG    784
                     |||||.||||||.||||||||.||.|..|||||.||.||.||.|||||||
BPUM_2163___f    735 TGAAGAGGCAAAAGAAAAAGCTTCTTATATCACACCAGTCCCTGGCGGAG    784

BSNT_03624___    785 TAGGTCCGATGACCATCACGATGCTTGCGCATAATACTGTTAAATCTGCG    834
                     |.|||||.|||||.||.|||||||||||.||||||||.||||||||.||.
BPUM_2163___f    785 TCGGTCCAATGACGATTACGATGCTTGCACATAATACGGTTAAATCAGCA    834

BSNT_03624___    835 AAACGTACGTTATCATAG    852
                     ||||||||.|||.||||.
BPUM_2163___f    835 AAACGTACATTAGCATAA    852


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03624 and BPUM_2163

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
