Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03623 and BPUM_2162

See Amino acid alignment / Visit BSNT_03623 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_03623___xseA.1.24716.seq
#    -bsequence dna-align/BPUM_2162___xseA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03623___xseA-BPUM_2162___xseA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03623___xseA-BPUM_2162___xseA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03623___xseA
# 2: BPUM_2162___xseA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1436
# Identity:     990/1436 (68.9%)
# Similarity:   990/1436 (68.9%)
# Gaps:         142/1436 ( 9.9%)
# Score: 3396.0
# 
#
#=======================================

BSNT_03623___      1 ATGGTGCAGGAATGCTTAGGAGAGGAGTTTTTAGACATGGGTGAAGCAGC     50
                                                         |||.|||||..|||
BPUM_2162___x      1 ------------------------------------ATGAGTGAAAAAGC     14

BSNT_03623___     51 GTATGTGACCGTCTCAGCGCTGACAAAGTATATAAAACGAAAATTCGATG    100
                     .|.||||||.|||.||||.||.|||||.||.||||||.|||||||.||||
BPUM_2162___x     15 CTTTGTGACGGTCACAGCCCTTACAAAATACATAAAAAGAAAATTTGATG     64

BSNT_03623___    101 TAGATCCTCACCTTGAAAATATTTGGATTAAAGGCGAATTGTCGAATGTA    150
                     |.|||||.||..|.|||.||||||||||.|||||.||.||.||.|||||.
BPUM_2162___x     65 TTGATCCGCATTTGGAAGATATTTGGATCAAAGGTGAGTTATCCAATGTC    114

BSNT_03623___    151 AAGATACACACACGAGGGCATATTTATTTCACTTTAAAAGACGAAAACGC    200
                     |||||.||..||.||||||||.|.||.||.||.|||||||||||||||||
BPUM_2162___x    115 AAGATTCATTCAAGAGGGCATGTGTACTTTACCTTAAAAGACGAAAACGC    164

BSNT_03623___    201 AAGAATGCAGTCGGTGATGTT----CGC---GAGACAAAGCGAGCGTCTG    243
                     |.|.|||||..|.||.|||||    |||   |.|.|.|||       |||
BPUM_2162___x    165 ACGCATGCAAGCTGTCATGTTCCAGCGCTCTGCGGCGAAG-------CTG    207

BSNT_03623___    244 CCTTTTAAACCTGAAAACGGAATGAAAGTGCTGGTCAGAGGCGGAATTTC    293
                     ||||||..||||.|.|..|||||||||||..|.||..|.|||||||||..
BPUM_2162___x    208 CCTTTTTCACCTAAGAGTGGAATGAAAGTATTTGTACGCGGCGGAATTCA    257

BSNT_03623___    294 CGTATATGAACCGAGCGGAAACTATCAATTATATGCCAAAGAAATGCAGC    343
                     .||.||||||||.|||||.||.|||||.||||||||.|||||||||||||
BPUM_2162___x    258 AGTCTATGAACCAAGCGGCAATTATCAGTTATATGCGAAAGAAATGCAGC    307

BSNT_03623___    344 CTGACGGGGTTGGAGCGCTTTATTTAGCGTACGAAGAATTAAAAAAGAAG    393
                     ||||.||.|||||.||.|||.||.|.||.||.|||||..||||.||.|||
BPUM_2162___x    308 CTGATGGTGTTGGTGCTCTTCATCTTGCTTATGAAGAGCTAAAGAAAAAG    357

BSNT_03623___    394 CTTGCCGGAGAAGGTTTATTTGACGACCGCTACAAAAAACAAATCCCCGC    443
                     ||.||..|.|||||.||||||||.|..|||||.|||||.|.||||||.|.
BPUM_2162___x    358 CTAGCAAGTGAAGGCTTATTTGATGCGCGCTATAAAAAGCCAATCCCTGA    407

BSNT_03623___    444 ATTTCCAGCCACAATCGGGGTTG---------TGACATCTCCAACGGGTG    484
                     ||.||||         |.|||||         |.||.||||||||.||.|
BPUM_2162___x    408 ATATCCA---------GAGGTTGTTGGTGTCATTACGTCTCCAACAGGAG    448

BSNT_03623___    485 CCGCTGTCAGAGACGTTATTACAACTCTAAAAAGAAGATATCCCCTTGTA    534
                     |.|||||..||||.||.|||||.||..|.||.||..|.||||..|..|..
BPUM_2162___x    449 CGGCTGTTCGAGATGTCATTACGACCATCAATAGGCGCTATCAGCAGGCG    498

BSNT_03623___    535 AAAGTCATTGTTCTTCCAGCGCTCGTACAAGGTGAAAATGCGAGCAGATC    584
                     |||.|||||||.|||||.||||||||.||||||||..||||||.|.|.||
BPUM_2162___x    499 AAAATCATTGTGCTTCCGGCGCTCGTCCAAGGTGAGCATGCGACCCGTTC    548

BSNT_03623___    585 CATCGTTACGCGCATTGAAGAGGCAAATGAAAAAGAGATTTGCGACGTAT    634
                     ||||||...|||.||..|.||.||.|||||||||.|..|.||.||.||.|
BPUM_2162___x    549 CATCGTAGAGCGGATCAAGGAAGCGAATGAAAAACAACTCTGTGATGTCT    598

BSNT_03623___    635 TAATTGTCGGGAGAGGCGGCGGTTCGATAGAAGAACTGTGGGCATTCAAT    684
                     |.||||||||.|||||.|||||||||||.|||||.||.|||||.||.|||
BPUM_2162___x    599 TGATTGTCGGAAGAGGAGGCGGTTCGATTGAAGAGCTTTGGGCTTTTAAT    648

BSNT_03623___    685 GAAGAAATTGTAGCACGCGCCATCTTTGCTTCCAATATTCCGATTATATC    734
                     ||||||..|||.|||.|.||.|||||.||.||..|.|||||.||.|||||
BPUM_2162___x    649 GAAGAAGCTGTGGCAAGGGCGATCTTCGCATCAGACATTCCAATCATATC    698

BSNT_03623___    735 GGCAGTCGGACATGAGACGGATTTTACGATCAGTGATTTTGTCGCCGATA    784
                     .|||||.||.||.||.||.||.|||||||||||||||||....||.||||
BPUM_2162___x    699 TGCAGTTGGGCACGAAACAGACTTTACGATCAGTGATTTCACTGCAGATA    748

BSNT_03623___    785 TCAGAGCCGCGACGCCGACAGGAGCAGCTGAGATTGCTGTGCCTCATACC    834
                     |.|||||..|.||.||.|||||||||||.||..|||||||.|||...||.
BPUM_2162___x    749 TGAGAGCACCCACACCAACAGGAGCAGCCGAACTTGCTGTTCCTAGCACG    798

BSNT_03623___    835 ACTGATTTAATCGAACGGGCAAAAACAGCGGAAGTCAGAATG--------    876
                     ||.||||||||.||.||     ||.|     ||.||| |.||        
BPUM_2162___x    799 ACGGATTTAATAGAGCG-----AATC-----AAATCA-ATTGATATACGG    837

BSNT_03623___    877 ---ACAAGAGCAATGCAGCAGC--ACCTCGGCCAGAA--AAAAGAACGGA    919
                        ||||||||..||.||.|.|  ||||    ||.||  ||||||.||..
BPUM_2162___x    838 CTAACAAGAGCTGTGAAGAATCAAACCT----CACAAGCAAAAGACCGCC    883

BSNT_03623___    920 TTCAAACGCTGCAATCGTCCTATGCCTTTCGTTTTCCAAAGCGTTTGTAT    969
                     ||....|||||||.||.||.||||||||.|||||.||||||||.||..|.
BPUM_2162___x    884 TTTTGGCGCTGCAGTCCTCTTATGCCTTCCGTTTCCCAAAGCGATTACAG    933

BSNT_03623___    970 GCGCAAAAAGAGCAGCA------------GTTTGACCTCGCGTACCAGCA   1007
                     |.|||||||||||||||            .||||||    |||       
BPUM_2162___x    934 GAGCAAAAAGAGCAGCAATTCGATTTGGTATTTGAC----CGT-------    972

BSNT_03623___   1008 GTTTCAAGCACAGCTGACCGCTCTTTTAGATCGGAAAAGCAGACAGCTGG   1057
                      ||||||..|||||||||....|...||||.|..|||.||||.|||||.|
BPUM_2162___x    973 -TTTCAAAAACAGCTGACAAGACAAATAGAGCAAAAACGCAGTCAGCTAG   1021

BSNT_03623___   1058 AGCGTGAAACGTACAGATTAGAGGCACTGCATCCTCATGAACAGCTGAAA   1107
                     |.||..|.||.|||||..|..||.||||.||||||.|.||.||||||...
BPUM_2162___x   1022 ACCGCCAGACATACAGGCTGAAGCCACTTCATCCTAAAGAGCAGCTGCTT   1071

BSNT_03623___   1108 CAAGCGAGAACACG--ATACCAGGAACAAACAAATCAGCTGAGAAAAAAT   1155
                     |||||||.||.|||  |..|||  |..|||||.|.|||||.|.....|.|
BPUM_2162___x   1072 CAAGCGAAAAAACGTCACGCCA--ATGAAACAGAACAGCTCATTCGTAGT   1119

BSNT_03623___   1156 ATGAATATCCAAATGAAGCAGC--TGCATTCCCAATTTCAAACCGTTCTT   1203
                     ||||||.|.||||||||  |.|  |.|||||.||.||.|||.|.||||||
BPUM_2162___x   1120 ATGAATGTGCAAATGAA--AACAATTCATTCGCAGTTCCAATCGGTTCTT   1167

BSNT_03623___   1204 GGCAAGCTGAATGCACTAAGTCCTCTTCAAGTGATGGAAAGAGGATACAG   1253
                     ||.||.||.||||||.|||.|||.||||||||||||||||||||.|||||
BPUM_2162___x   1168 GGTAAACTAAATGCATTAAATCCACTTCAAGTGATGGAAAGAGGCTACAG   1217

BSNT_03623___   1254 CTTGGCTTATAAAGAAGATAAACTCATTAAAAGTGTCAGTCAAATAGAAG   1303
                     |||.||.||||||||||||.||.|.||.||||||||.|..|||.||| ||
BPUM_2162___x   1218 CTTAGCCTATAAAGAAGATGAATTAATAAAAAGTGTGAACCAAGTAG-AG   1266

BSNT_03623___   1304 A-GCAGGACCGGCTTGA--AGTCAAGCTGAAGGATGG-CGTGCTGACCTG   1349
                     | |.||||.|.|| |||  | |||.|.|||||||||| ||| ||.|..||
BPUM_2162___x   1267 ACGAAGGATCAGC-TGACTA-TCACGATGAAGGATGGACGT-CTCATTTG   1313

BSNT_03623___   1350 TGAAG-TATTAGAAAAGAGAGGGG-AAGAAAAATGA   1383
                     |||.| |||| ||.||| |||||| ||..|..||||
BPUM_2162___x   1314 TGAGGTTATT-GAGAAG-GAGGGGCAATCATCATGA   1347


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