Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03623 and BPUM_2162
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:09
# Commandline: needle
# -asequence dna-align/BSNT_03623___xseA.1.24716.seq
# -bsequence dna-align/BPUM_2162___xseA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03623___xseA-BPUM_2162___xseA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03623___xseA-BPUM_2162___xseA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03623___xseA
# 2: BPUM_2162___xseA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1436
# Identity: 990/1436 (68.9%)
# Similarity: 990/1436 (68.9%)
# Gaps: 142/1436 ( 9.9%)
# Score: 3396.0
#
#
#=======================================
BSNT_03623___ 1 ATGGTGCAGGAATGCTTAGGAGAGGAGTTTTTAGACATGGGTGAAGCAGC 50
|||.|||||..|||
BPUM_2162___x 1 ------------------------------------ATGAGTGAAAAAGC 14
BSNT_03623___ 51 GTATGTGACCGTCTCAGCGCTGACAAAGTATATAAAACGAAAATTCGATG 100
.|.||||||.|||.||||.||.|||||.||.||||||.|||||||.||||
BPUM_2162___x 15 CTTTGTGACGGTCACAGCCCTTACAAAATACATAAAAAGAAAATTTGATG 64
BSNT_03623___ 101 TAGATCCTCACCTTGAAAATATTTGGATTAAAGGCGAATTGTCGAATGTA 150
|.|||||.||..|.|||.||||||||||.|||||.||.||.||.|||||.
BPUM_2162___x 65 TTGATCCGCATTTGGAAGATATTTGGATCAAAGGTGAGTTATCCAATGTC 114
BSNT_03623___ 151 AAGATACACACACGAGGGCATATTTATTTCACTTTAAAAGACGAAAACGC 200
|||||.||..||.||||||||.|.||.||.||.|||||||||||||||||
BPUM_2162___x 115 AAGATTCATTCAAGAGGGCATGTGTACTTTACCTTAAAAGACGAAAACGC 164
BSNT_03623___ 201 AAGAATGCAGTCGGTGATGTT----CGC---GAGACAAAGCGAGCGTCTG 243
|.|.|||||..|.||.||||| ||| |.|.|.||| |||
BPUM_2162___x 165 ACGCATGCAAGCTGTCATGTTCCAGCGCTCTGCGGCGAAG-------CTG 207
BSNT_03623___ 244 CCTTTTAAACCTGAAAACGGAATGAAAGTGCTGGTCAGAGGCGGAATTTC 293
||||||..||||.|.|..|||||||||||..|.||..|.|||||||||..
BPUM_2162___x 208 CCTTTTTCACCTAAGAGTGGAATGAAAGTATTTGTACGCGGCGGAATTCA 257
BSNT_03623___ 294 CGTATATGAACCGAGCGGAAACTATCAATTATATGCCAAAGAAATGCAGC 343
.||.||||||||.|||||.||.|||||.||||||||.|||||||||||||
BPUM_2162___x 258 AGTCTATGAACCAAGCGGCAATTATCAGTTATATGCGAAAGAAATGCAGC 307
BSNT_03623___ 344 CTGACGGGGTTGGAGCGCTTTATTTAGCGTACGAAGAATTAAAAAAGAAG 393
||||.||.|||||.||.|||.||.|.||.||.|||||..||||.||.|||
BPUM_2162___x 308 CTGATGGTGTTGGTGCTCTTCATCTTGCTTATGAAGAGCTAAAGAAAAAG 357
BSNT_03623___ 394 CTTGCCGGAGAAGGTTTATTTGACGACCGCTACAAAAAACAAATCCCCGC 443
||.||..|.|||||.||||||||.|..|||||.|||||.|.||||||.|.
BPUM_2162___x 358 CTAGCAAGTGAAGGCTTATTTGATGCGCGCTATAAAAAGCCAATCCCTGA 407
BSNT_03623___ 444 ATTTCCAGCCACAATCGGGGTTG---------TGACATCTCCAACGGGTG 484
||.|||| |.||||| |.||.||||||||.||.|
BPUM_2162___x 408 ATATCCA---------GAGGTTGTTGGTGTCATTACGTCTCCAACAGGAG 448
BSNT_03623___ 485 CCGCTGTCAGAGACGTTATTACAACTCTAAAAAGAAGATATCCCCTTGTA 534
|.|||||..||||.||.|||||.||..|.||.||..|.||||..|..|..
BPUM_2162___x 449 CGGCTGTTCGAGATGTCATTACGACCATCAATAGGCGCTATCAGCAGGCG 498
BSNT_03623___ 535 AAAGTCATTGTTCTTCCAGCGCTCGTACAAGGTGAAAATGCGAGCAGATC 584
|||.|||||||.|||||.||||||||.||||||||..||||||.|.|.||
BPUM_2162___x 499 AAAATCATTGTGCTTCCGGCGCTCGTCCAAGGTGAGCATGCGACCCGTTC 548
BSNT_03623___ 585 CATCGTTACGCGCATTGAAGAGGCAAATGAAAAAGAGATTTGCGACGTAT 634
||||||...|||.||..|.||.||.|||||||||.|..|.||.||.||.|
BPUM_2162___x 549 CATCGTAGAGCGGATCAAGGAAGCGAATGAAAAACAACTCTGTGATGTCT 598
BSNT_03623___ 635 TAATTGTCGGGAGAGGCGGCGGTTCGATAGAAGAACTGTGGGCATTCAAT 684
|.||||||||.|||||.|||||||||||.|||||.||.|||||.||.|||
BPUM_2162___x 599 TGATTGTCGGAAGAGGAGGCGGTTCGATTGAAGAGCTTTGGGCTTTTAAT 648
BSNT_03623___ 685 GAAGAAATTGTAGCACGCGCCATCTTTGCTTCCAATATTCCGATTATATC 734
||||||..|||.|||.|.||.|||||.||.||..|.|||||.||.|||||
BPUM_2162___x 649 GAAGAAGCTGTGGCAAGGGCGATCTTCGCATCAGACATTCCAATCATATC 698
BSNT_03623___ 735 GGCAGTCGGACATGAGACGGATTTTACGATCAGTGATTTTGTCGCCGATA 784
.|||||.||.||.||.||.||.|||||||||||||||||....||.||||
BPUM_2162___x 699 TGCAGTTGGGCACGAAACAGACTTTACGATCAGTGATTTCACTGCAGATA 748
BSNT_03623___ 785 TCAGAGCCGCGACGCCGACAGGAGCAGCTGAGATTGCTGTGCCTCATACC 834
|.|||||..|.||.||.|||||||||||.||..|||||||.|||...||.
BPUM_2162___x 749 TGAGAGCACCCACACCAACAGGAGCAGCCGAACTTGCTGTTCCTAGCACG 798
BSNT_03623___ 835 ACTGATTTAATCGAACGGGCAAAAACAGCGGAAGTCAGAATG-------- 876
||.||||||||.||.|| ||.| ||.||| |.||
BPUM_2162___x 799 ACGGATTTAATAGAGCG-----AATC-----AAATCA-ATTGATATACGG 837
BSNT_03623___ 877 ---ACAAGAGCAATGCAGCAGC--ACCTCGGCCAGAA--AAAAGAACGGA 919
||||||||..||.||.|.| |||| ||.|| ||||||.||..
BPUM_2162___x 838 CTAACAAGAGCTGTGAAGAATCAAACCT----CACAAGCAAAAGACCGCC 883
BSNT_03623___ 920 TTCAAACGCTGCAATCGTCCTATGCCTTTCGTTTTCCAAAGCGTTTGTAT 969
||....|||||||.||.||.||||||||.|||||.||||||||.||..|.
BPUM_2162___x 884 TTTTGGCGCTGCAGTCCTCTTATGCCTTCCGTTTCCCAAAGCGATTACAG 933
BSNT_03623___ 970 GCGCAAAAAGAGCAGCA------------GTTTGACCTCGCGTACCAGCA 1007
|.||||||||||||||| .|||||| |||
BPUM_2162___x 934 GAGCAAAAAGAGCAGCAATTCGATTTGGTATTTGAC----CGT------- 972
BSNT_03623___ 1008 GTTTCAAGCACAGCTGACCGCTCTTTTAGATCGGAAAAGCAGACAGCTGG 1057
||||||..|||||||||....|...||||.|..|||.||||.|||||.|
BPUM_2162___x 973 -TTTCAAAAACAGCTGACAAGACAAATAGAGCAAAAACGCAGTCAGCTAG 1021
BSNT_03623___ 1058 AGCGTGAAACGTACAGATTAGAGGCACTGCATCCTCATGAACAGCTGAAA 1107
|.||..|.||.|||||..|..||.||||.||||||.|.||.||||||...
BPUM_2162___x 1022 ACCGCCAGACATACAGGCTGAAGCCACTTCATCCTAAAGAGCAGCTGCTT 1071
BSNT_03623___ 1108 CAAGCGAGAACACG--ATACCAGGAACAAACAAATCAGCTGAGAAAAAAT 1155
|||||||.||.||| |..||| |..|||||.|.|||||.|.....|.|
BPUM_2162___x 1072 CAAGCGAAAAAACGTCACGCCA--ATGAAACAGAACAGCTCATTCGTAGT 1119
BSNT_03623___ 1156 ATGAATATCCAAATGAAGCAGC--TGCATTCCCAATTTCAAACCGTTCTT 1203
||||||.|.|||||||| |.| |.|||||.||.||.|||.|.||||||
BPUM_2162___x 1120 ATGAATGTGCAAATGAA--AACAATTCATTCGCAGTTCCAATCGGTTCTT 1167
BSNT_03623___ 1204 GGCAAGCTGAATGCACTAAGTCCTCTTCAAGTGATGGAAAGAGGATACAG 1253
||.||.||.||||||.|||.|||.||||||||||||||||||||.|||||
BPUM_2162___x 1168 GGTAAACTAAATGCATTAAATCCACTTCAAGTGATGGAAAGAGGCTACAG 1217
BSNT_03623___ 1254 CTTGGCTTATAAAGAAGATAAACTCATTAAAAGTGTCAGTCAAATAGAAG 1303
|||.||.||||||||||||.||.|.||.||||||||.|..|||.||| ||
BPUM_2162___x 1218 CTTAGCCTATAAAGAAGATGAATTAATAAAAAGTGTGAACCAAGTAG-AG 1266
BSNT_03623___ 1304 A-GCAGGACCGGCTTGA--AGTCAAGCTGAAGGATGG-CGTGCTGACCTG 1349
| |.||||.|.|| ||| | |||.|.|||||||||| ||| ||.|..||
BPUM_2162___x 1267 ACGAAGGATCAGC-TGACTA-TCACGATGAAGGATGGACGT-CTCATTTG 1313
BSNT_03623___ 1350 TGAAG-TATTAGAAAAGAGAGGGG-AAGAAAAATGA 1383
|||.| |||| ||.||| |||||| ||..|..||||
BPUM_2162___x 1314 TGAGGTTATT-GAGAAG-GAGGGGCAATCATCATGA 1347
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