Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03589 and BPUM_2150

See Amino acid alignment / Visit BSNT_03589 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:07
# Commandline: needle
#    -asequence dna-align/BSNT_03589___yqzF.1.24716.seq
#    -bsequence dna-align/BPUM_2150___yqzF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03589___yqzF-BPUM_2150___yqzF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03589___yqzF-BPUM_2150___yqzF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03589___yqzF
# 2: BPUM_2150___yqzF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 261
# Identity:     159/261 (60.9%)
# Similarity:   159/261 (60.9%)
# Gaps:          48/261 (18.4%)
# Score: 431.5
# 
#
#=======================================

BSNT_03589___      1 ATGAGCCGACTTCTTGCGCTTTTAATATTAG---------TCATCCCCGG     41
                     |||.|..||.|.|||||         |||||         |.||.||.||
BPUM_2150___y      1 ATGGGGAGAATACTTGC---------ATTAGTGATTATTTTAATACCTGG     41

BSNT_03589___     42 GGCTATTTCTGCTTTAGGCATTAAACTGATGAGAGATACACTTTTCGGCC     91
                     .||..||.||||..|.||.|||||.|||.|..|.||.||..|||||||  
BPUM_2150___y     42 CGCGTTTGCTGCACTTGGGATTAAGCTGTTACGCGACACTGTTTTCGG--     89

BSNT_03589___     92 ATACAATCA----AGCCATTTTCAGCTCTTTGGCTCCAAGG-GTTGTCAG    136
                      ||..||||    | ||.|||.||..|.|.|||||.||||| .||| |||
BPUM_2150___y     90 -TATCATCATTGCA-CCGTTTCCATTTTTATGGCTGCAAGGAATTG-CAG    136

BSNT_03589___    137 GATTCATCTTTTTTG--CGATCGGCCTCTATG----TGCTGGCCGGGTTC    180
                     ||||..|.|||||.|  .||  ||.||.||.|    |||||||    ||.
BPUM_2150___y    137 GATTGGTTTTTTTAGGAGGA--GGTCTTTACGTAGTTGCTGGC----TTT    180

BSNT_03589___    181 ATTTTATACAGAGACAGAAAACGCAATCAAGTCAGCCCGCGATT----CA    226
                     ||||||||.||||||.|.|||||.|||.||||.|.|.|.||.||    ||
BPUM_2150___y    181 ATTTTATATAGAGACCGCAAACGAAATAAAGTAACCACCCGCTTTAAACA    230

BSNT_03589___    227 GAAAACGATAG    237
                     ||    ||||.
BPUM_2150___y    231 GA----GATAA    237


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