Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03583 and BPUM_2146
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:07
# Commandline: needle
# -asequence dna-align/BSNT_03583___buk.1.24716.seq
# -bsequence dna-align/BPUM_2146___buk.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03583___buk-BPUM_2146___buk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03583___buk-BPUM_2146___buk.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03583___buk
# 2: BPUM_2146___buk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1162
# Identity: 803/1162 (69.1%)
# Similarity: 803/1162 (69.1%)
# Gaps: 110/1162 ( 9.5%)
# Score: 2679.5
#
#
#=======================================
BSNT_03583___ 1 ATGAAAGTGCTACATGACGAAAAA----CGCATTCTCACAATTAATCCAG 46
.||| ||||.|||.| ||.|||||||||||||||||.|
BPUM_2146___b 1 ------TTGC----TGACAAAAGAATGGCGTATTCTCACAATTAATCCTG 40
BSNT_03583___ 47 GCTCAACTTCAACGAAAATCGGTGTTTTTCATAACGAAAGAAGCATTTTT 96
||||.||||||||.|||||||||||.|||||.||.|||.||...||||||
BPUM_2146___b 41 GCTCTACTTCAACAAAAATCGGTGTGTTTCACAATGAACGATCTATTTTT 90
BSNT_03583___ 97 GAAAAAACATTGAGACACAACATA-GAAGAGCTGCAGCGATTTGACCGAA 145
||||..|||.||||||| .|||.| ||.||..|..|||.|||....|..|
BPUM_2146___b 91 GAAACGACACTGAGACA-TACAGATGAGGAATTAAAGCAATTCCCTCATA 139
BSNT_03583___ 146 TTATTGATCAGTATGAATTTCGTAA--AAACCATATTCTCGAA-ACGCTT 192
||||||||||||.|..||||||||| |||||| ||..||| |||||.
BPUM_2146___b 140 TTATTGATCAGTTTTCATTTCGTAAAGAAACCA---TCCTGAAGACGCTG 186
BSNT_03583___ 193 CATGAGCAGGGAATCAATATCTCAAAGTTTGATGCAGTCTGCGCAAGAGG 242
|||||.||.||.||.||.||||||||||||||||||||.||.||..|.||
BPUM_2146___b 187 CATGAACAAGGGATGAACATCTCAAAGTTTGATGCAGTTTGTGCGCGCGG 236
BSNT_03583___ 243 CGGCCTTCTCCGGCCGATTGAAGGCGGGACCTACGTAGTGAATGATGAAA 292
|||.|||||.||.|||||||||||.|||||.||.|.|||.|||||..|||
BPUM_2146___b 237 CGGTCTTCTTCGTCCGATTGAAGGTGGGACATATGAAGTCAATGAGCAAA 286
BSNT_03583___ 293 TGATTGAGGACTTGAAAAG-CGGTTACGCCGGTCAGCATGCTTCTAATCT 341
||.|..|.|||.| ||||| .||.||.||.||.||||||||.||||||||
BPUM_2146___b 287 TGGTGCAAGACCT-AAAAGAAGGATATGCTGGCCAGCATGCATCTAATCT 335
BSNT_03583___ 342 CGGCGGCATTATCGCGCGGGAAATCGCTGAC--GGCCTGAATATCCCTTC 389
.|||||.||.|||||.||.|||||.|| || |||.||||.|||||..|
BPUM_2146___b 336 GGGCGGTATCATCGCACGAGAAATTGC--ACTTGGCTTGAACATCCCAGC 383
BSNT_03583___ 390 GTATATCGTCGACCCTGTTGTCGTAGACGA---------AATGTCAGTGC 430
.|.|||.|||||.||.|||||.||.||.|| ||| |||
BPUM_2146___b 384 TTTTATTGTCGATCCAGTTGTAGTGGATGAGCTAAAACCAAT-----TGC 428
BSNT_03583___ 431 TTGCGAAAGTTTCGGGCATGCCTGAA--ATTGAACGGAAAAGCATTTTCC 478
| ||.| ||||.||..|||| || ||||||.|.||||||||.||||
BPUM_2146___b 429 T--CGTA--TTTCAGGTCTGCC--AACGATTGAAAGAAAAAGCATCTTCC 472
BSNT_03583___ 479 ATGCGTTAAACCAAAAAGCTGTCGCTCGTAAAGCGGCAGCCTCTCTTGGC 528
||||.|||||.||||||||.|||||..|.|||.|.||.||.|||.||||.
BPUM_2146___b 473 ATGCATTAAATCAAAAAGCAGTCGCAAGAAAAACAGCTGCATCTTTTGGG 522
BSNT_03583___ 529 AAACGATATGAGAACATGAAAATGATTATTACCCATATGGGCGGAGGTAT 578
||.||.||.||..|..||||.|||||||||||.|||||||||||.||.||
BPUM_2146___b 523 AAGCGCTACGAAGATTTGAACATGATTATTACACATATGGGCGGCGGCAT 572
BSNT_03583___ 579 TACAATTGGCGTCCATGACCGCGGGCGAGTGGTAGATGTCAATAACGGCC 628
.||.|||||.||||||||....|||..|||..|.||.|||||||||||.|
BPUM_2146___b 573 CACGATTGGTGTCCATGAAAAAGGGAAAGTCATTGACGTCAATAACGGAC 622
BSNT_03583___ 629 TGCACGGCGAGGGACCATTCAGTCCTGAACGAGCAGGAACAGTGCCTGCG 678
||||.|||||.||.||.|||||.||.||.|||||.||.||..||||..|.
BPUM_2146___b 623 TGCATGGCGAAGGCCCTTTCAGCCCGGAGCGAGCGGGGACCTTGCCAACT 672
BSNT_03583___ 679 GGAGATCTTGTTGATCTATGTTTTTCAGGGGAATATACAAAAGAAGAAAT 728
||.||.|||||..|.||.||.|||||.||.||.||||...||||.|||||
BPUM_2146___b 673 GGTGACCTTGTCAACCTTTGCTTTTCTGGTGAGTATAGTCAAGAGGAAAT 722
BSNT_03583___ 729 CATGAAAAAGC---TTGTTGGCACCGGCGGACTTTTAGGCTATCTCGGTA 775
..|| |||| ||.||||....||.||.|||...|||||.||.||||
BPUM_2146___b 723 GCTG---AAGCGCATTATTGGTGAAGGTGGTCTTGCGGGCTACCTTGGTA 769
BSNT_03583___ 776 CAAATGATGCAGTAAAAGTGGAACAGATGATTCAAGGGGGCGATGAAAAA 825
|.|..|||||.||.|||||.||.|.|||||||.|||..|||||||||..|
BPUM_2146___b 770 CGACAGATGCTGTGAAAGTAGAGCGGATGATTGAAGCAGGCGATGAACGA 819
BSNT_03583___ 826 GC-CCGCTTCATTTATGATGCCATG-GCATATCAGGTAGCAAAGGAAATC 873
|| .||| |.||||||||.||.||| || |||||..|.||.|||||||||
BPUM_2146___b 820 GCAGCGC-TGATTTATGAGGCGATGTGC-TATCAAATTGCCAAGGAAATC 867
BSNT_03583___ 874 GGGGCAGCCAGCGCGGCGTTAAAAGGCGAAGTTGAAGCGATTGTGCTGAC 923
||.||.||.||.||.|..||||||||||.||||||.|..|||||.||.||
BPUM_2146___b 868 GGTGCGGCTAGTGCTGTCTTAAAAGGCGCAGTTGACGTCATTGTTCTAAC 917
BSNT_03583___ 924 GGGAGGCCTTGCGTACGGCAAAAGCTTTGTTTCTGCTATCAGA--TCATA 971
.||.||.||||||||..|||||....||...||...|||.||| || |
BPUM_2146___b 918 AGGCGGACTTGCGTATAGCAAACAAATTACATCAAGTATTAGAGGTC--A 965
BSNT_03583___ 972 CATAGATTGGATTTCAGACGTTTTAGTCTATCCGGGTGAAAATGAACTGC 1021
|||.||.|||||||||||.||..|.||.|||||.||||||||||||||||
BPUM_2146___b 966 CATTGACTGGATTTCAGATGTAGTCGTGTATCCAGGTGAAAATGAACTGC 1015
BSNT_03583___ 1022 AGTCTCTT-GCCCAAGGGGCGC-TCAGAGTATTGCAGGGCGAAGAGCAAT 1069
|.|| ||| ||..||||.||.| || |||||..| ...|||||..|||
BPUM_2146___b 1016 AATC-CTTAGCAGAAGGTGCACTTC---GTATTTTA-AAAGAAGAAGAAT 1060
BSNT_03583___ 1070 ---CCAAACAATATCGTATTG---AATAG--------------------- 1092
|.|||.||||.|..|.|| ||.||
BPUM_2146___b 1061 CTCCGAAAGAATACCCAAATGATCAACAGATGAAGAAAGGAGTGACAAGT 1110
BSNT_03583___ 1092 ------------ 1092
BPUM_2146___b 1111 CATGGCAACTGA 1122
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