Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03582 and BPUM_2145
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03582___lpdV.1.24716.seq
# -bsequence dna-align/BPUM_2145___bfmBC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03582___lpdV-BPUM_2145___bfmBC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03582___lpdV-BPUM_2145___bfmBC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03582___lpdV
# 2: BPUM_2145___bfmBC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1457
# Identity: 1060/1457 (72.8%)
# Similarity: 1060/1457 (72.8%)
# Gaps: 64/1457 ( 4.4%)
# Score: 3679.5
#
#
#=======================================
BSNT_03582___ 1 ATGGCAACTGAGTATGACGTAGTCATTCTGGGCGGCGGTACCGGCGGTTA 50
|||||||||||.||.|||.|.||||||||.||.||.||.||.|||||.||
BPUM_2145___b 1 ATGGCAACTGAATACGACCTCGTCATTCTTGGTGGAGGCACAGGCGGCTA 50
BSNT_03582___ 51 TGTTGCGGCCATCAGAGCCGCTCAGCTCGGCTTAAAAACAGCCGTTGTGG 100
|||.||||||||..|.|||.|.|||||.||.||.||||||||..||||.|
BPUM_2145___b 51 TGTAGCGGCCATTCGTGCCTCACAGCTTGGATTGAAAACAGCAATTGTAG 100
BSNT_03582___ 101 AAAAGGAAAAACTCGGAGGAACATGTCTGCATAAAGGCTGTATCCCGAGT 150
||||.|||||.||.||.|||||.|||||.||||||||.||.||.|||..|
BPUM_2145___b 101 AAAAAGAAAAGCTTGGCGGAACGTGTCTCCATAAAGGATGCATTCCGTCT 150
BSNT_03582___ 151 AAAGCGCTGCTTAGAAGCGCAGAGGTATACCGGACAGCTCGTGAA----G 196
||.||||||||||||||.||.||.||.||.|..|| |||.|| |
BPUM_2145___b 151 AAGGCGCTGCTTAGAAGTGCTGAAGTTTATCAAAC----CGTCAAACGTG 196
BSNT_03582___ 197 CCGATCAATTCGGGGTGGAAACGGC---TGGCGTGTCCCTCAACTTTGAA 243
|.|.|.|.||.||.||.|| ||| ||||.|..||.|..|.||||..
BPUM_2145___b 197 CTGCTGATTTTGGCGTTGA---GGCAAATGGCATTGCCTTGCAGTTTGCC 243
BSNT_03582___ 244 AAAGTGCAGCAGCGTAAG-CAAGCCG---TTGTTGATAAGCTTGCAGCGG 289
||.||||||.| ||| .||||.| ||||.||.||.||.||||..|
BPUM_2145___b 244 AATGTGCAGAA----AAGAAAAGCAGAGATTGTAGAGAAACTAGCAGGCG 289
BSNT_03582___ 290 GTGTAAATCATTTAATGAAAAAAGGAAAAATTGACGTGTA-CACCGGATA 338
|.||.||.||||||||||||.||||.||||||||.||.|| .|..||||
BPUM_2145___b 290 GCGTTAAACATTTAATGAAACAAGGGAAAATTGATGTTTATGAAGGGAT- 338
BSNT_03582___ 339 TGGACGTATCCTTGGACCGTCAATCTTCTCTCCGCTGCCGGGAACAATTT 388
.||.||.||.|||||.||.||.|||||.||.||..||||.|||||.||.|
BPUM_2145___b 339 CGGCCGCATTCTTGGTCCATCTATCTTTTCACCAATGCCAGGAACCATCT 388
BSNT_03582___ 389 CTGTTGAGCGGGGAAATGGCGAAGAAAATGACATGCTGATACCGAAACAA 438
|.||.||...||.||||||.||.||||||||.|||||.||.||.||.||.
BPUM_2145___b 389 CCGTAGAAATGGCAAATGGAGATGAAAATGAAATGCTCATTCCAAAGCAG 438
BSNT_03582___ 439 GTGATCATTGCAACAGGATCAAGACCGAGAATGCTTCCGGGTCTTGAAGC 488
||.||||||||.|||||.||||||||..|..||||.||.||.||||||||
BPUM_2145___b 439 GTCATCATTGCGACAGGTTCAAGACCACGTGTGCTGCCTGGGCTTGAAGC 488
BSNT_03582___ 489 GGACGGTAAGTCTGTACTGACTTCAGATGAGGCGCTCCAAATGGAGGAGC 538
.||.||.|.|....||||.||.||||||||.||.||..||.||...||||
BPUM_2145___b 489 AGATGGGACGCACATACTTACATCAGATGATGCACTAGAACTGCCAGAGC 538
BSNT_03582___ 539 TGCCACAATCAATCATCATTGTCGGCGGAGGGGTTATCGGTATCGAATGG 588
|.||.||.||.||..|||||||||||||.|||||.|||||.|||||.|||
BPUM_2145___b 539 TTCCGCAGTCGATGCTCATTGTCGGCGGCGGGGTGATCGGAATCGAGTGG 588
BSNT_03582___ 589 GCGTCTATGCTTCATGATTTTGGTGTGAAGGTAACGGTTATTGAATACGC 638
||.||||||||..|||||||||||||||||||.|||||.|||||||..||
BPUM_2145___b 589 GCTTCTATGCTCAATGATTTTGGTGTGAAGGTGACGGTGATTGAATTTGC 638
BSNT_03582___ 639 GGATCGCATATTGCCGACTGAAGATCTAGAGATTTCAAAAGAAATGGAAA 688
.|||||||||||||||||.||.||||..||.|||||.|||||||||||||
BPUM_2145___b 639 AGATCGCATATTGCCGACAGAGGATCATGACATTTCTAAAGAAATGGAAA 688
BSNT_03582___ 689 GTCTTCTTA-AGAAAAAAGGCATCCAGTTCATAACAGGGGCAAAAGTGCT 737
..||| ||| ..||||||||||||...||..|.|||...||.|||||.||
BPUM_2145___b 689 AGCTT-TTATCTAAAAAAGGCATCACCTTTGTGACAAATGCGAAAGTACT 737
BSNT_03582___ 738 GCCTGACACAATGACAAAAA-CATCAGATGATATC---AGCATACAAGCG 783
|||.||.|| .|.|||||| || .||.||..|| |..||.|||||.
BPUM_2145___b 738 GCCAGATAC--CGTCAAAAAGCA--GGAGGACCTCGTGACGATTCAAGCA 783
BSNT_03582___ 784 GAAAAAGACGGAGAAA-----CCGTTACCTACTCT---GCTGAGAAAATG 825
|||||.||.|||||.| .|||| | ||.||.|||.|.
BPUM_2145___b 784 GAAAAGGATGGAGACATTCTGACGTT--------TGAAGCAGAAAAACTT 825
BSNT_03582___ 826 CTAGTTTCCATCGGCAGACAGGCAAATATCGAAGGCATTGGCCTAGAGAA 875
||..|.||..||||||||....|||||||.|||||||||||.||.||.||
BPUM_2145___b 826 CTTCTATCAGTCGGCAGAGTACCAAATATTGAAGGCATTGGTCTTGAAAA 875
BSNT_03582___ 876 CACCGATATTGTTACTGAAA---ATGGCATGATTTCAGTCAATGAAAGCT 922
|||.||.||....||.|||| |.||||| |.|| ||.||||||...|
BPUM_2145___b 876 CACAGACATCCAAACAGAAAAACAAGGCAT--TGTC-GTGAATGAACATT 922
BSNT_03582___ 923 GCCAGACGAAGGAATCTCATATTTATGCAATTGGAGACGTAATCGGTGGT 972
..||.|||||.|||||.||||||||||||||.|||||.||.||.||.||.
BPUM_2145___b 923 ATCAAACGAAAGAATCACATATTTATGCAATAGGAGATGTCATTGGCGGA 972
BSNT_03582___ 973 CTGCAGTTAGCTCACGTTGCTTCACATGAGGGAATTATTGCTGTTGAGCA 1022
||.|||||.||.||.||.||||||||.||.||.||.||||||||.|||||
BPUM_2145___b 973 CTTCAGTTGGCACATGTGGCTTCACACGAAGGCATGATTGCTGTGGAGCA 1022
BSNT_03582___ 1023 TTTTGCAGGTCTCAATCCGCATCCGCTTGATCCGACGCTTGTGCCGAAGT 1072
|.|.||.||||..|||||..|.|||||.|||...|||||.||..|.||.|
BPUM_2145___b 1023 TATGGCTGGTCAAAATCCAAAGCCGCTCGATGAAACGCTCGTTTCTAAAT 1072
BSNT_03582___ 1073 GCATTTACTCAAGCCCTGAAGCTGCCAGTGTTGGCTTAACCGAAGACGAA 1122
|..|||||||...|||.|||.|.||.||||||||..|.||.|||.|.|..
BPUM_2145___b 1073 GTGTTTACTCTCACCCGGAAACCGCTAGTGTTGGACTCACTGAACAGGCG 1122
BSNT_03582___ 1123 GCAAAGGCG-AACGGGCAT--AATGTCAAAATCGGCAAGTTCCCATTTAT 1169
|||||.|.| || |||.| || ||||||||.||.||.||||||||.||
BPUM_2145___b 1123 GCAAAAGAGCAA--GGCTTCGAA-GTCAAAATGGGGAAATTCCCATTCAT 1169
BSNT_03582___ 1170 GGCGATTGGAAAAGCGCTTGTATACGGTGAAAGCGACGGTTTTGTCAAAA 1219
||||||.||||||||.|||||||||||.||....||.||.||||||||||
BPUM_2145___b 1170 GGCGATCGGAAAAGCACTTGTATACGGGGAGTCAGATGGATTTGTCAAAA 1219
BSNT_03582___ 1220 TCGTGGCGGACCGAGATACAGATGATATTCTCGGCGTTCATATGATCGGC 1269
||.|.||.||.|.|.|.||||||||||||.|.||..||||||||||.||.
BPUM_2145___b 1220 TCATTGCTGATCAAAAGACAGATGATATTTTAGGGATTCATATGATTGGT 1269
BSNT_03582___ 1270 CCGCATGTCACCGACATGATTTCTGAAGCGGGTCTTGCCAAAGTGCTGGA 1319
||.||||||||.||.|||||.||.|||||.||..|.||.|||||.||.||
BPUM_2145___b 1270 CCTCATGTCACAGATATGATATCAGAAGCTGGATTAGCTAAAGTACTTGA 1319
BSNT_03582___ 1320 CGCAACGCCGTGGGAGATCGGGCAAACGATTCACCCGCATCCAACGCTT- 1368
.||||||||||||||..||||||||||.|||||||||||.||||| |||
BPUM_2145___b 1320 TGCAACGCCGTGGGAAGTCGGGCAAACAATTCACCCGCACCCAAC-CTTA 1368
BSNT_03582___ 1369 TCTGAAGCAATTGGGGAAGCAGCGCTTGCCGCAGATGGCAAAGCCATTCA 1418
||.||.||.|||||.||.|||||.|||||.|..||.||.|||||.||.||
BPUM_2145___b 1369 TCAGAGGCGATTGGCGAGGCAGCCCTTGCTGTTGACGGGAAAGCGATCCA 1418
BSNT_03582___ 1419 TTTTTAA 1425
|||||||
BPUM_2145___b 1419 TTTTTAA 1425
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