Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03579 and BPUM_2143

See Amino acid alignment / Visit BSNT_03579 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:06
# Commandline: needle
#    -asequence dna-align/BSNT_03579___bkdAB.1.24716.seq
#    -bsequence dna-align/BPUM_2143___bfmBAB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03579___bkdAB-BPUM_2143___bfmBAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03579___bkdAB-BPUM_2143___bfmBAB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03579___bkdAB
# 2: BPUM_2143___bfmBAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 984
# Identity:     767/984 (77.9%)
# Similarity:   767/984 (77.9%)
# Gaps:           0/984 ( 0.0%)
# Score: 2967.0
# 
#
#=======================================

BSNT_03579___      1 ATGTCAGTAATGTCATATATTGATGCAATCAATTTGGCGATGAAAGAAGA     50
                     |||.|.||.|||||||||||.||.||.||.|...||||.|||||||||||
BPUM_2143___b      1 ATGCCTGTTATGTCATATATAGACGCCATTACACTGGCAATGAAAGAAGA     50

BSNT_03579___     51 AATGGAACGAGATTCTCGCGTTTTCGTCCTTGGGGAAGATGTAGGAAGAA    100
                     ||||||.||||||.|....||.||.||.||.||.||.|||||.||.|.||
BPUM_2143___b     51 AATGGAGCGAGATCCGAAAGTGTTTGTGCTCGGAGAGGATGTCGGGAAAA    100

BSNT_03579___    101 AAGGCGGTGTGTTTAAAGCGACAGCGGGACTCTATGAACAATTCGGGGAA    150
                     |.||||||||.|||||||||||||||||.||||||||.||||||||.|||
BPUM_2143___b    101 AGGGCGGTGTATTTAAAGCGACAGCGGGTCTCTATGAGCAATTCGGAGAA    150

BSNT_03579___    151 GAGCGCGTTATGGATACGCCGCTTGCTGAATCTGCGATCGCAGGAGTCGG    200
                     |.||||||.||||||||.||.|||||.|||||.||.||.||.|||||.||
BPUM_2143___b    151 GCGCGCGTCATGGATACACCTCTTGCAGAATCAGCCATTGCTGGAGTTGG    200

BSNT_03579___    201 TATCGGAGCGGCAATGTACGGAATGAGACCGATTGCTGAAATGCAGTTTG    250
                     .||.||.||.||.|||||.||||||.|.||.||||||||.|||||.||||
BPUM_2143___b    201 GATTGGGGCAGCGATGTATGGAATGCGCCCAATTGCTGAGATGCAATTTG    250

BSNT_03579___    251 CTGATTTCATTATGCCGGCAGTCAACCAAATTATTTCTGAAGCGGCTAAA    300
                     |.|||||.||.|||||.||..|.||||||||.|||||.||.|||||.|||
BPUM_2143___b    251 CGGATTTTATCATGCCTGCCATTAACCAAATCATTTCAGAGGCGGCGAAA    300

BSNT_03579___    301 ATCCGCTACCGCAGCAACAATGACTGGAGCTGTCCGATTGTCGTCAGAGC    350
                     ||..|.||||||...||.||.||.||||||||||||||.|||.||.|.||
BPUM_2143___b    301 ATTAGATACCGCTCAAATAACGATTGGAGCTGTCCGATGGTCATCCGCGC    350

BSNT_03579___    351 GCCATACGGCGGAGGCGTGCACGGAGCCCTGTATCATTCTCAATCAGTCG    400
                     .||.||.||.||.||.||.|||||.||.||.||||||||.||||||||.|
BPUM_2143___b    351 ACCTTATGGGGGCGGAGTTCACGGGGCGCTTTATCATTCACAATCAGTTG    400

BSNT_03579___    401 AAGCAATTTTCGCCAACCAGCCCGGACTGAAAATTGTCATGCCATCAACA    450
                     ||||.|||||.|||||||||||.||..||||.|||||||||||.||.||.
BPUM_2143___b    401 AAGCGATTTTTGCCAACCAGCCTGGTTTGAAGATTGTCATGCCTTCTACG    450

BSNT_03579___    451 CCATATGACGCCAAGGGTCTATTAAAAGCTGCAGTTCGTGACGAAGACCC    500
                     ||.|||||.|..||.|||||.|||||||||||.||.||.||...|||.||
BPUM_2143___b    451 CCTTATGATGTAAAAGGTCTTTTAAAAGCTGCGGTACGAGATCCAGATCC    500

BSNT_03579___    501 AGTGCTGTTTTTTGAGCACAAGCGGGCGTACCGTCTGATAAAGGGAGAGG    550
                     .||..||||.|||||.|||||.||.||.||||||||.||.||.|||||.|
BPUM_2143___b    501 TGTATTGTTCTTTGAACACAAACGTGCCTACCGTCTCATTAAAGGAGAAG    550

BSNT_03579___    551 TTCCGGCTGATGATTATGTCCTGCCAATCGGCAAGGCGGACGTAAAACGG    600
                     |.||.|..||.|||||....||.||.||.||.||.||.||.||.|||||.
BPUM_2143___b    551 TACCTGAAGAGGATTACACACTTCCTATTGGAAAAGCAGATGTGAAACGT    600

BSNT_03579___    601 GAAGGCGACGACATCACAGTGATCACATACGGTCTGTGTGTCCACTTCGC    650
                     ||||||||.||.|||||.||.||.|||||.||.||.||.|||||.||.||
BPUM_2143___b    601 GAAGGCGATGATATCACGGTCATTACATATGGCCTCTGCGTCCATTTTGC    650

BSNT_03579___    651 CTTACAAGCTGCAGAACGTCTCGAAAAAGATGGCATTTCAGCGCATGTGG    700
                     ..|.|||||.|||||.||.||.|..||||||||||||||.||||||.|..
BPUM_2143___b    651 GCTGCAAGCAGCAGACCGCCTTGCGAAAGATGGCATTTCTGCGCATATTC    700

BSNT_03579___    701 TGGATTTAAGAACAGTTTACCCGCCTGATAAAGAAGCCATCATCGAAGCT    750
                     |.|||||.||||||||.|||||||.||||.|.||||||||.||.|||||.
BPUM_2143___b    701 TCGATTTGAGAACAGTGTACCCGCTTGATCAGGAAGCCATTATTGAAGCG    750

BSNT_03579___    751 GCGTCCAAAACTGGAAAGGTTCTTTTGGTCACAGAAGATACAAAAGAAGG    800
                     ||.||.|||||.||.||.||.|||.|..|.||.||||||||||||||.||
BPUM_2143___b    751 GCATCAAAAACAGGCAAAGTGCTTCTTCTAACGGAAGATACAAAAGAGGG    800

BSNT_03579___    801 CAGCATCATGAGCGAAGTAGCCGCAATTATATCCGAGCATTGTCTGTTCG    850
                     ||||||||||||.||.|||||.||.||.|||||.||||||||..|.||.|
BPUM_2143___b    801 CAGCATCATGAGTGAGGTAGCGGCGATCATATCAGAGCATTGCTTATTTG    850

BSNT_03579___    851 ACTTAGACGCGCCAATCAAACGGCTTGCAGGTCCTGATATTCCGGCTATG    900
                     |.||||||||.|||||||||||.||.||.||.||.||.||.||.||.|||
BPUM_2143___b    851 ATTTAGACGCACCAATCAAACGTCTAGCCGGACCAGAAATCCCAGCAATG    900

BSNT_03579___    901 CCTTATGCGCCGACAATGGAAAAATACTTTATGGTCAACCCTGATAAAGT    950
                     ||||||||.||||||||||||||||.|||||||||||||||.|||||.||
BPUM_2143___b    901 CCTTATGCACCGACAATGGAAAAATTCTTTATGGTCAACCCAGATAAGGT    950

BSNT_03579___    951 GGAAGCGGCGATGAGAGAATTAGCGGAGTTTTAA    984
                     .|||||.|..||||||||..||||||.|||||||
BPUM_2143___b    951 AGAAGCTGAAATGAGAGAGCTAGCGGCGTTTTAA    984


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