Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03572 and BPUM_2139
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03572___yqiW.1.24716.seq
# -bsequence dna-align/BPUM_2139___yqiW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03572___yqiW-BPUM_2139___yqiW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03572___yqiW-BPUM_2139___yqiW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03572___yqiW
# 2: BPUM_2139___yqiW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 441
# Identity: 340/441 (77.1%)
# Similarity: 340/441 (77.1%)
# Gaps: 6/441 ( 1.4%)
# Score: 1279.0
#
#
#=======================================
BSNT_03572___ 1 TTGAATATGGACTTTAATTTATTTATGAATGATATTGTCCGCCAAGCGAG 50
.|||||||.||.||||||||||||||||||||||||||....||||||||
BPUM_2139___y 1 ATGAATATTGATTTTAATTTATTTATGAATGATATTGTGAAACAAGCGAG 50
BSNT_03572___ 51 ACAGGAAAT--TACAGCTGCTGGATACACTGAGCTGAAAACAGCTGAAGA 98
|.|.||.|| .|||| |||||.||.||||||||.|.|.||.|||||||
BPUM_2139___y 51 AGAAGAGATCAAACAG--GCTGGCTATACTGAGCTTACATCATCTGAAGA 98
BSNT_03572___ 99 GGTGGATGAGGCACTTACGAAAAAAGGAACGACGCTTGTCATGGTAAACT 148
.||.|||||.|||||..|.||||||||.|||.|.|||||.|||||.||.|
BPUM_2139___y 99 AGTAGATGAAGCACTGTCTAAAAAAGGCACGGCACTTGTGATGGTGAATT 148
BSNT_03572___ 149 CTGTTTGCGGATGCGCCGGAGGAATTGCAAGACCGGCAGCCTACCATTCC 198
|.||.||||||||.||.||.||.|||||||||||.||.||...|.||||.
BPUM_2139___y 149 CGGTATGCGGATGTGCTGGCGGTATTGCAAGACCAGCTGCAGGCTATTCT 198
BSNT_03572___ 199 GTTCACTATGATAAAAGACCTGATCAGCTCGTCACCGTTTTTGCCGGACA 248
|||||.||.|||||..||||.|||||..|..|.||.||.|||||.|||||
BPUM_2139___y 199 GTTCATTACGATAAGCGACCAGATCAATTGCTGACTGTGTTTGCTGGACA 248
BSNT_03572___ 249 GGATAAAGAAGCGACAGCGCGTGCGCGAGACTATTTTGAAGGTTATCCGC 298
.||.|||||.||.|||||..|.||.||.||.||.||||||||.|..||||
BPUM_2139___y 249 AGACAAAGAGGCAACAGCAAGAGCCCGTGAATACTTTGAAGGCTTCCCGC 298
BSNT_03572___ 299 CATCTTCTCCGTCCTTTGCGATT-TTGAAAGACGGAAAGATCATGAAAAT 347
|||||||.||.|||||||| ||| ||.|||||.|||||||||||.|||||
BPUM_2139___y 299 CATCTTCACCATCCTTTGC-ATTGTTAAAAGATGGAAAGATCATTAAAAT 347
BSNT_03572___ 348 GGTAGAGCGTCATGAAATTGAAGGCCACGAGCCGATGGCCGTAGTGGCAA 397
|||.||.||.||||||||||||||.||||||||.||||..||.|||.|||
BPUM_2139___y 348 GGTCGAACGCCATGAAATTGAAGGACACGAGCCAATGGAAGTCGTGTCAA 397
BSNT_03572___ 398 AGCTGCAGGAAGCCTTTGAAGAATATTGTGAAGAAGTATAA 438
||||.||.|..||.||.||.||..||||.||||||.|.|||
BPUM_2139___y 398 AGCTCCAAGCTGCGTTCGATGAGCATTGCGAAGAAATGTAA 438
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