Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03569 and BPUM_2138
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_03569___yqiX.1.24716.seq
# -bsequence dna-align/BPUM_2138___yqiX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03569___yqiX-BPUM_2138___yqiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03569___yqiX-BPUM_2138___yqiX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03569___yqiX
# 2: BPUM_2138___yqiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity: 537/815 (65.9%)
# Similarity: 537/815 (65.9%)
# Gaps: 97/815 (11.9%)
# Score: 1618.0
#
#
#=======================================
BSNT_03569___ 1 ATGAAAAAATGGCTCTTATTACTTGT---AGCTG--CCTGCATTACCTTT 45
||||||||.|||.|.|||||||||.| ||||| |.|||| ..|
BPUM_2138___y 1 ATGAAAAAGTGGTTATTATTACTTATGACAGCTGGTCTTGCA-----GCT 45
BSNT_03569___ 46 GCATTATCTGCTTGCGG------CTCAAGCAATTCA---GGTTCAGAAGG 86
|||.|..|.|||||.|| .||.|..|||||| |..||||.||.
BPUM_2138___y 46 GCACTCGCAGCTTGTGGAACTTCTTCTAATAATTCAAACGCATCAGGAGA 95
BSNT_03569___ 87 CGGCAAGAAAAAATTAATTATGGGTACTTCGGCGGATTACAAACCGTTTG 136
.| |.||||.|.|..||||||..||.||.||.|||||....||.||||
BPUM_2138___y 96 TG---ACAAAACACTCGTTATGGCGACATCAGCAGATTATCCGCCATTTG 142
BSNT_03569___ 137 AATATAAAGAAGGCGATAATATTGTCGGCTTTGATGTAGAGTTGGCAAAA 186
|||..|||||.||.|||||.||||||||.||||||||.||..|.||||.|
BPUM_2138___y 143 AATCAAAAGACGGAGATAAAATTGTCGGTTTTGATGTTGATCTTGCAACA 192
BSNT_03569___ 187 GCTCTGGC---AAAGAAGG----CAGGCTATGAAATTGAAGTGCAGGATA 229
||.||.|| ||||||.| ||.|||| |||||| ||.||||
BPUM_2138___y 193 GCACTAGCGAAAAAGAACGGCTACAAGCTA-GAAATT------CAAGATA 235
BSNT_03569___ 230 TGGACTT--CAACAG-CTTAATTA-CAGCGCTTAAATCAAA-ACAGGTGG 274
||||.|| || || ||| .|| |||||||||||.|||| |.||.| |
BPUM_2138___y 236 TGGATTTTGCA--AGTCTT--GTATCAGCGCTTAAAACAAATAAAGCT-G 280
BSNT_03569___ 275 ATCTCGTTCTGTCAGGAATGACACCAACGCCTGAG-----CGTAAAAAAC 319
||.|.||.||..||||.|||||.||.|| || ||||||||||
BPUM_2138___y 281 ATATTGTCCTTGCAGGCATGACTCCTAC-----AGAAAAACGTAAAAAAC 325
BSNT_03569___ 320 AAGTTGATTTTTCAGATGTGTATTACACAGCGAACCATATGATTGTCAGC 369
||.|.|||||.||.|||||.|||||||..||.||..|..|..||||| .|
BPUM_2138___y 326 AATTAGATTTCTCTGATGTTTATTACAATGCTAAAAACTTAGTTGTC-TC 374
BSNT_03569___ 370 AAA-AAAGACAGCGGCATTCAATCTTTGAAAGACCTGAAAGGAAAAACAG 418
||| |||...|||||.||..||.|...|||||||.|.||||..|||||||
BPUM_2138___y 375 AAAGAAATCTAGCGGAATGAAAACAGAGAAAGACTTAAAAGATAAAACAG 424
BSNT_03569___ 419 TTGGCGTTCAGCTTGGCTCTATTCAGGAAGA-GAAG----------GGGA 457
|.||||||||..|.||.||.||.|||.|.|| |||| |..|
BPUM_2138___y 425 TCGGCGTTCAATTAGGTTCGATCCAGCAGGATGAAGCAAACGGTTTGCAA 474
BSNT_03569___ 458 AAGAGCTTTCTCCGGAATATGGTTTTAAAACAGAAGACCGCAACAGAATT 507
|||| |||||...||.|||...|||||||||||.|.|||.
BPUM_2138___y 475 AAGA-----------AATATAACTTAAAAGTGGAAGACCGCAATAAAATC 513
BSNT_03569___ 508 TCTGATTTGGTGCAGGAAATCAAATCTGACCGCTTCGATGCCGCGATTAT 557
||||||.|..|.||.|||||||||.|.|..||.||.|||||.||.|||||
BPUM_2138___y 514 TCTGATATCATTCAAGAAATCAAAGCAGGTCGTTTTGATGCAGCCATTAT 563
BSNT_03569___ 558 TGAAGACATTGTTGCAGAAGGGTATTTCAAATCAAATGATGACCTGCAAG 607
||||||.|..||.||.|..||.|||||.|||..|.|..|.||..|.||||
BPUM_2138___y 564 TGAAGATAAAGTAGCTGCTGGTTATTTGAAAAAAGAAAAAGATTTCCAAG 613
BSNT_03569___ 608 GCTTTGTGATTCCTGATGCGAA-AG--CGGAAGAAGCCGGTTCAGCAATT 654
.||||| |||| ||| || |..|.||| ||||||||.|||
BPUM_2138___y 614 CCTTTG-GATT--------GAATAGTTCAAACGAA---GGTTCAGCTATT 651
BSNT_03569___ 655 GCTTTC-AGAAAGGACAGTGAACTGACAGACAAATTCAATAAAGCGCTCA 703
||.||| ||||| .|.||.||..|.||||..|||||.||||||.|..|.|
BPUM_2138___y 652 GCATTCAAGAAA-AATAGCGACTTAACAGCTAAATTTAATAAATCATTAA 700
BSNT_03569___ 704 AGGAAATGGAAGATAACGGAGAGCTTGAGAAATTGAAGAAAAAATGGTTC 753
|.||||||.||||.||.||.||.|||||.|||||.|..|||||||||||.
BPUM_2138___y 701 AAGAAATGCAAGACAATGGCGAACTTGATAAATTAATTAAAAAATGGTTT 750
BSNT_03569___ 754 ACTGGCGAGAAGTAA 768
.|||..||.||.|||
BPUM_2138___y 751 GCTGATGAAAAATAA 765
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