Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03557 and BPUM_2130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_03557___yqjE.1.24716.seq
# -bsequence dna-align/BPUM_2130___yqjE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03557___yqjE-BPUM_2130___yqjE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03557___yqjE-BPUM_2130___yqjE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03557___yqjE
# 2: BPUM_2130___yqjE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity: 837/1142 (73.3%)
# Similarity: 837/1142 (73.3%)
# Gaps: 46/1142 ( 4.0%)
# Score: 2955.0
#
#
#=======================================
BSNT_03557___ 1 ATGGTGAATGAAAAACGCCTGCTGGAAGAATTTTTAGAGCTTGTCCAAAT 50
|||.|.|||||||||||..|.||.||.|||||||||||.||.||.||.||
BPUM_2130___y 1 ATGATCAATGAAAAACGTTTACTAGACGAATTTTTAGAACTAGTTCAGAT 50
BSNT_03557___ 51 TGACTCAGAAACAAAGCACGAAGCTGAAA--TCTGCAAAGTGCTGAAACG 98
|||.||.||||||||.||||||| .|||| |.|| .|||| ||.|||.|
BPUM_2130___y 51 TGATTCGGAAACAAAACACGAAG-AGAAAATTGTG-GAAGT-CTTAAAAG 97
BSNT_03557___ 99 -AAAATTTTCTGATTTAGGTGTGGACGTTAAA-------GAAGACAATAC 140
||||||.||..| |..||||| |||| ||||||.|..|
BPUM_2130___y 98 AAAAATTCTCGCA-----GCTTGGAC--TAAAAGTGGTGGAAGACGACTC 140
BSNT_03557___ 141 AATGGATATCACGGGCCACGGAGCCGGTAACCTGATTTGCACGCTAAAAG 190
||..|..|..||.||||||||.||.||.||||||||.||.||.||..|||
BPUM_2130___y 141 AAAAGCAAAAACAGGCCACGGTGCAGGCAACCTGATCTGTACACTGGAAG 190
BSNT_03557___ 191 GGACAAAACAAACAGATACGATCTATTTTACATCTCATATGGACACAGTT 240
|.||..||.|..|.|||||.||||||||.||.|||||||||||||||||.
BPUM_2130___y 191 GCACTCAAGAGGCTGATACCATCTATTTCACTTCTCATATGGACACAGTG 240
BSNT_03557___ 241 GTACCCGGAAACGGCGTAAAACCAGTTGTAGAGAACGGTTACGTCAAAAC 290
||.||.||.||.||||||||.|||||..|.||..||||.||.||.|||||
BPUM_2130___y 241 GTTCCAGGTAATGGCGTAAAGCCAGTCATTGAAGACGGCTATGTGAAAAC 290
BSNT_03557___ 291 TGACGGCACGACGATTTTAGGCGCTGATGATAAAGCGGGATTGGCTGCAA 340
.||.||.||.||.|||.|.||.|||||.||||||.|.|||.|.||.||||
BPUM_2130___y 291 AGATGGAACAACCATTCTTGGTGCTGACGATAAAACAGGACTTGCCGCAA 340
BSNT_03557___ 341 TGTTTGAGGCGATTAAGGTGCTGAA--AGAAGAAAACATTG---AACACG 385
|||||||.||.||....||.||||| ||||||| || .|||.|
BPUM_2130___y 341 TGTTTGAAGCAATCCGTGTACTGAAAGAGAAGAA-----TGTACCACATG 385
BSNT_03557___ 386 GCACGATTGAATTCATCATCACAGTAGGGGAAGAATCGGGTCTGATCGGA 435
|.|||||||||||..|||||||||..||.||.|||||.||.||..|||||
BPUM_2130___y 386 GAACGATTGAATTTGTCATCACAGCTGGTGAGGAATCAGGACTTGTCGGA 435
BSNT_03557___ 436 GCGAAGGCTCTTGA-CCGTTCTATGATCACTGCATCCTACGGCTATGCTC 484
||.||.||..|.|| |||...| ||||.||.||..|.||.||||||||||
BPUM_2130___y 436 GCAAAAGCGTTAGATCCGAAGT-TGATGACAGCCGCATATGGCTATGCTC 484
BSNT_03557___ 485 TTGATTCAGACGGAAAAGTCGGAAATATTATTGTGGCCGCGCCGACACAG 534
||||||||||.||.||.||.||||..|||||.||.||.|||||.||||||
BPUM_2130___y 485 TTGATTCAGATGGCAAGGTGGGAACCATTATCGTTGCAGCGCCAACACAG 534
BSNT_03557___ 535 GCGAAGGTAAGAGCGGCAATTTTCGGGAAAACCGCGCACGCCGGGGTTGA 584
|||||.|||.|.||..|.||||.|||||||||.||.|||||.||.||.|.
BPUM_2130___y 535 GCGAAAGTACGCGCAACGATTTACGGGAAAACAGCTCACGCAGGTGTCGC 584
BSNT_03557___ 585 ACCTGAAAAAGGGATTTCAGCGATTACAATCGCTAGC-AAAGCCATCTCA 633
.|||||||||||..|.||.||.|||||.||.|| |.| ||||||||..|.
BPUM_2130___y 585 GCCTGAAAAAGGTGTGTCTGCAATTACCATTGC-ATCAAAAGCCATTGCT 633
BSNT_03557___ 634 AAAATGCCATTGGGCCGTATCGATGAAGAAACAACAGCTAATATCGGCCG 683
|..|||||..|.|||||.||.||||||||||||||.||.||||||||.||
BPUM_2130___y 634 AGTATGCCGCTTGGCCGAATTGATGAAGAAACAACGGCGAATATCGGTCG 683
BSNT_03557___ 684 GTTTGAAGGCGGCACACAAACAAACATTGTGTGCGATGAAGTTCATATTC 733
.|||||||||||.||.|||||.||.||||||||.|||.||||..||||.|
BPUM_2130___y 684 TTTTGAAGGCGGAACGCAAACGAATATTGTGTGTGATCAAGTCGATATCC 733
BSNT_03557___ 734 TTGCTGAAGCGCGCTCTTTAGTTCCTGAGAAAATGGAAGCTCAGGTTCAA 783
||||||||||.||||||||||..||||..|||||||||||.||.||....
BPUM_2130___y 734 TTGCTGAAGCACGCTCTTTAGAACCTGCAAAAATGGAAGCGCAAGTAGCG 783
BSNT_03557___ 784 AAAATGAAAGCTGCTTTTGAAGAGGCAGCTGCTGATATGGGCGGACGCGC 833
||.|||||||...|.||||||.|..|.|||...||.|||||||||.|.||
BPUM_2130___y 784 AAGATGAAAGAATCCTTTGAAAAAACCGCTAAAGAAATGGGCGGAAGTGC 833
BSNT_03557___ 834 AGAAGTCGAAATTGAGGTTATGTATCCGGGCTTTAAA---TATCAAGACG 880
.||.||..|.|||||..|.||||||||.|||||.||| |.|| |||
BPUM_2130___y 834 CGATGTACACATTGACATCATGTATCCAGGCTTCAAATTCTCTC---ACG 880
BSNT_03557___ 881 GCGACCAAGTTGTTGAAATCGCGAAAAAAGCGGCTGCTAAAATCGGACGT 930
||||.|||||.||.|||.|.||.||||||||||||||.|||||.||.|||
BPUM_2130___y 881 GCGATCAAGTCGTAGAAGTGGCAAAAAAAGCGGCTGCGAAAATTGGCCGT 930
BSNT_03557___ 931 CCAAGCGAGCTGCAAACGAGCGGCGGCGGAAGCGATGCGAACGTAATCGC 980
|||...||.||.||.|||||.|||||.||.||.|||||.|||||.||.||
BPUM_2130___y 931 CCATCAGAACTACAGACGAGTGGCGGAGGCAGTGATGCAAACGTCATTGC 980
BSNT_03557___ 981 TGGTCATGGCATCCCGACGGTCAATCTTGCTGTCGGTTATGAGCAAATCC 1030
.||..|.|||.||||.||.|||||.||.|||||.||.|||||..|.||.|
BPUM_2130___y 981 AGGAAACGGCGTCCCAACTGTCAACCTAGCTGTTGGATATGAAGATATTC 1030
BSNT_03557___ 1031 ATACAAAAAATGAAAAAATGCCGATCGAAGAGCTCGTTAAAACGGCAGAA 1080
||||.||||||||.|||||||||||.|||||..|.||.|||||.||.|||
BPUM_2130___y 1031 ATACGAAAAATGAGAAAATGCCGATTGAAGAATTAGTCAAAACAGCTGAA 1080
BSNT_03557___ 1081 ATGGTTGTTGCCATTATTGAAGAGGCGGCAAA------ATAA 1116
||||||.|.||||||||.|||||..||.|||| .|||
BPUM_2130___y 1081 ATGGTTCTCGCCATTATCGAAGAAACGACAAATCCATCGTAA 1122
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