Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00689 and BPUM_2123
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:28
# Commandline: needle
# -asequence dna-align/BSNT_00689___glcU.1.24716.seq
# -bsequence dna-align/BPUM_2123___glcU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00689___glcU-BPUM_2123___glcU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00689___glcU-BPUM_2123___glcU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00689___glcU
# 2: BPUM_2123___glcU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 946
# Identity: 545/946 (57.6%)
# Similarity: 545/946 (57.6%)
# Gaps: 179/946 (18.9%)
# Score: 1263.0
#
#
#=======================================
BSNT_00689___ 1 ATGGATTTATTATTGGCTCTTCTCCCGGCTTTGTTTTGGGGGAGCATTGT 50
.|||...|.||||..||.||||||||.||..|.|||||||||||.|||||
BPUM_2123___g 1 GTGGGCATCTTATATGCACTTCTCCCAGCGATATTTTGGGGGAGTATTGT 50
BSNT_00689___ 51 TCTCTTCAATGTGAAA-TTAGGCGGCGGG---CCGTACAGCCAGACACTG 96
||||.|||.|||.||| || |||||| .|.|||...||.||.||.
BPUM_2123___g 51 TCTCATCAGTGTCAAACTT----GGCGGGAATGCATACCAACAAACCCTC 96
BSNT_00689___ 97 GGAACGACGATCGGGGCACTCATTGTTTCTAT-----CGTTATTTACTTT 141
||.|..|||.|.||.|||.|.||..||||.|| |.||.||||
BPUM_2123___g 97 GGTATAACGCTTGGCGCATTTATCTTTTCAATTGCAGCCTTCTTTA---- 142
BSNT_00689___ 142 TTTGTTCA----GCCCGTTCTGTCACTTCGCATTTTTATTGTTG------ 181
||| |||.|..|||.||| || ||||||.|||
BPUM_2123___g 143 -----TCAAAATGCCAGAGCTGACAC--CG----TTTATTTTTGCGGTCT 181
BSNT_00689___ 182 --GAATCGTATCCGGCTTATTTTGG-TCACTTGGACAGGCCAACCAGCTG 228
| ||.|.||.|||.|.|||||| .|| |||||||....||.|||||.
BPUM_2123___g 182 CTG--TCATTTCAGGCATCTTTTGGAGCA-TTGGACAAATGAATCAGCTT 228
BSNT_00689___ 229 AAAAGCATTCAATTGATGGGCGTGTCGAAAACAATGCCGATTTCCACAGG 278
..||||.||...||..|.||.||.|||||..|..|.||..|.||.||.||
BPUM_2123___g 229 TCAAGCGTTGCGTTTCTCGGAGTCTCGAAGGCGGTTCCTTTGTCAACGGG 278
BSNT_00689___ 279 AATGCAGCTCGTTTCCACCTCATTGTTCGGTGTGATCGTGTTCCGCGAAT 328
.||||||||.||...|||..|.||.||.||.||.||.||.|||...||||
BPUM_2123___g 279 CATGCAGCTTGTGAGCACGACTTTATTTGGCGTCATGGTCTTCAAAGAAT 328
BSNT_00689___ 329 GGTCAACACCGATTGCGAT--TACGC-TTGGCGTTCTCGCTTTG--ATCT 373
||..|| ||||..||.| |||.| ||| ||||| |.|| || |
BPUM_2123___g 329 GGCAAA---CGATGACGGTCATACTCATTG--GTTCT---TGTGCCAT-T 369
BSNT_00689___ 374 TT----ATCATTGTGGGAATCATTCTCACGTC-CTTGG--AAGATAAGAA 416
|| ||.||||..||..|..|.||.||.|| ||.|| ||.|.|||||
BPUM_2123___g 370 TTACTGATTATTGCAGGTGTTGTGCTGACATCGCTCGGTCAAAAAAAGAA 419
BSNT_00689___ 417 T---GATAAAAAAGAGGGCGAGCCAAGCAATTTGAA-AAAGGGCATTTTG 462
| |.|...||.||.|| |.|||||||.|| |||||| ||..|.
BPUM_2123___g 420 TGGCGGTGGGAACGATGG------AGGCAATTTCAAGAAAGGG-ATCGTC 462
BSNT_00689___ 463 ATTCTCCTTGTTTCGACTCTTGGTTA-TTTGGTTTATGTAGTC------- 504
|||||.|||.||||.||..||||.|| .|||| .|||||.|||
BPUM_2123___g 463 ATTCTGCTTATTTCAACGGTTGGCTACGTTGG-ATATGTCGTCATTTTAA 511
BSNT_00689___ 505 -GTGGCTAGATTATTCAATGTGTCCGGCTGGTCCGCGCTGCTGCCACAGG 553
||||.|..| ||||.| .||||||||.||.||..|.||.||..
BPUM_2123___g 512 GGTGGTTTCA-TATTGA-------TGGCTGGTCTGCCCTTGTTCCGCAAT 553
BSNT_00689___ 554 CAATTGGCATGGTGGT-------CGGGGGGTTAGTTTTAACCTATAGACA 596
||.|.||||||.||.| ..||.|.|||||.|.|| .||
BPUM_2123___g 554 CAGTCGGCATGCTGCTTTCTTCCTTGGCGATTAGTCTCAA-------GCA 596
BSNT_00689___ 597 CAAACCCTTTAACAAGTATGCGATCAGAAATATTCTCCCAGG----GTTA 642
.||.||.||||..||.|||.||.|.|.||||||..|..|.|| |||
BPUM_2123___g 597 GAATCCGTTTAGTAAATATACGTTTAAAAATATCATTGCCGGCCTTGTT- 645
BSNT_00689___ 643 ATCTGGGCAGGC-GGAAAT------ATGTTTTTGTTTAT--TTCTCA--- 680
|||.| |.| |||||| .|..|||||..||| ..||||
BPUM_2123___g 646 ---TGGTC-GACAGGAAATCTCGGACTTCTTTTGGCTATCCCGCTCATTG 691
BSNT_00689___ 681 --GCCGCGAGTCGGCGTTGCAACGAGCTTTTCCCTTTCACAAATGGGAAT 728
|.|||| ||| ||.|||||..|.|||||.|..||.||
BPUM_2123___g 692 GTGTCGCG-GTC------------AGTTTTTCGATGTCACAGACAGGGAT 728
BSNT_00689___ 729 TGTCATTTCTACGCTCGGCGGTATT--TTCATCCTGCGTGAAAAGAAAAC 776
.||.||.||.||..|.|||||.||| ||.| |.||||||
BPUM_2123___g 729 CGTTATCTCAACATTAGGCGGCATTTATTTA-------TTAAAAGA---- 767
BSNT_00689___ 777 GAAA-CGTC-------AGCTAATAGCAATTGCGATCGGGATTATCCTGAT 818
|||| |.|| |||| |.|..|||||...|.|..|.| ||||
BPUM_2123___g 768 GAAAGCATCCAGAACAAGCT--TTGTCATTGCAGGCTGCTTGA---TGAT 812
BSNT_00689___ 819 TATTGCTGCCGCCGTATTCTTAGGAATCGCCAAAACAAATTCATAA 864
.|||||.|.||.|||..|..|||| |...||||| |||.
BPUM_2123___g 813 CATTGCAGGCGGCGTGCTGCTAGG------CTTTACAAA---ATAG 849
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