Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00690 and BPUM_2122

See Amino acid alignment / Visit BSNT_00690 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:28
# Commandline: needle
#    -asequence dna-align/BSNT_00690___gdh.1.24716.seq
#    -bsequence dna-align/BPUM_2122___gdh.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00690___gdh-BPUM_2122___gdh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00690___gdh-BPUM_2122___gdh.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00690___gdh
# 2: BPUM_2122___gdh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 839
# Identity:     540/839 (64.4%)
# Similarity:   540/839 (64.4%)
# Gaps:         106/839 (12.6%)
# Score: 1561.5
# 
#
#=======================================

BSNT_00690___      1 ATGTATCCGGACTTAAAAGGAAAAGTCGTCGCT-ATTACAGGAGCTGCTT     49
                     ||||||||.||.|||.||||||||...||| || ||.||||||||||.|.
BPUM_2122___g      1 ATGTATCCAGATTTAGAAGGAAAAACAGTC-CTGATCACAGGAGCTGGTA     49

BSNT_00690___     50 CAGGGCTCGGAAAGGCAATGGCCATTCGCTTCGG-CAAGGAGCAGGCAAA     98
                     ||||..|.||..|.||.|||||....||.||.|| ||| ||..|.||.||
BPUM_2122___g     50 CAGGAATAGGTCAAGCGATGGCGCGCCGGTTTGGACAA-GAAAAAGCCAA     98

BSNT_00690___     99 AGTGGTTATCAACTATTAT---AGTAATAAACAAGATCCGAACGA-----    140
                     .|||||.|||||.|||| |   ||  ||.||.||.||||..|.||     
BPUM_2122___g     99 TGTGGTGATCAATTATT-TCTCAG--ATCAAGAAAATCCAGATGACACCA    145

BSNT_00690___    141 ----GG----TAAAAGAAGAGGTCATCAAGGCG----GGCGGTGAAGCTG    178
                         ||    |.|||.||         |.||||    |||.|||||..| 
BPUM_2122___g    146 TTGTGGATATTCAAAAAA---------ATGGCGGACAGGCTGTGAAAAT-    185

BSNT_00690___    179 TTGTCGTCCAA-GGAGATGTCACGAAAGAGGAAGATGTAAAAAATATCGT    227
                             ||| |||||||||.||||.||.||||||            ||
BPUM_2122___g    186 --------CAAGGGAGATGTCTCGAAGGAAGAAGAT------------GT    215

BSNT_00690___    228 GCAAACGGCAATT---AAAG----------AGTTCGGCACACTCGATATT    264
                     |||..||...|||   ||||          | ||.||||..||.|||.|.
BPUM_2122___g    216 GCAGGCGATGATTGACAAAGCCGTTGATACA-TTTGGCAGCCTTGATGTC    264

BSNT_00690___    265 ATGATTAATAATGCCGGTCTTGAAAATCCTGTGCCATCTCAC-GAAATGC    313
                     |||||.|||||.||.|||.||||||||...|||||.||| || ||||||.
BPUM_2122___g    265 ATGATCAATAACGCAGGTATTGAAAATGAAGTGCCTTCT-ACTGAAATGA    313

BSNT_00690___    314 CGCTTAAGGATTGGGATAAAGTCA--TCGGCACAAACTTAACAGGTGCCT    361
                     ||||..|..|||||.|.|||||||  |||  ||.||.|||||||||...|
BPUM_2122___g    314 CGCTGGATAATTGGAACAAAGTCATGTCG--ACCAATTTAACAGGTATGT    361

BSNT_00690___    362 TTTTAGGAAGCCGTGAAGCGATTAAATATTTCGTAGAAAACGATATCAAG    411
                     ||.|.||..|||||||.||..|.||.|||.|...||        ||||.|
BPUM_2122___g    362 TTCTCGGCTGCCGTGATGCACTGAAGTATATGACAG--------ATCATG    403

BSNT_00690___    412 GGA---AATG-----TCATCAACATGTCCAGT--GTGCACGAAGTGATTC    451
                     |.|   ||.|     |||||||.|||||  ||  ||.|||.|....||.|
BPUM_2122___g    404 GAATAGAAGGATCGATCATCAATATGTC--GTCGGTTCACCAGCAAATCC    451

BSNT_00690___    452 CTTGGCCGTTATTT-GTTCACTACGCGGCAAGTAAAGGCGGGATAAAGCT    500
                     ||||||| ..|||| ||.||.||.||.|||||||||||.||....|||||
BPUM_2122___g    452 CTTGGCC-ACATTTCGTGCATTATGCAGCAAGTAAAGGGGGCGCCAAGCT    500

BSNT_00690___    501 GATGACAGAAACATTGGCGTTGGAATACGCGCCGAAGGGCATTCGCGTGA    550
                     |.||||||||||..||||..|.|||||.||.||.||....||.||.||.|
BPUM_2122___g    501 GCTGACAGAAACGCTGGCACTAGAATATGCCCCTAAAAAAATCCGTGTAA    550

BSNT_00690___    551 ACAATATCGGGCCAGGTGCGATCAATACGCCAATCAATGCTGAAAAATTT    600
                     |||.|||.|..||.||.||.|||.||||.||.||||||||.||||||||.
BPUM_2122___g    551 ACAGTATTGCACCGGGCGCCATCGATACCCCGATCAATGCGGAAAAATTC    600

BSNT_00690___    601 GCTGACCCTAAACAGAAAGCAGATGTAGA--AAGCATGATTCCGATGGGG    648
                     |.|||.||...|..||||..||..|| ||  .||| ||||.||.||.||.
BPUM_2122___g    601 GATGATCCCGCATTGAAAAAAGGCGT-GATTGAGC-TGATCCCCATTGGT    648

BSNT_00690___    649 TATATCGGCGAACCGGAGGAGATCGCCGCAGTG-GCAGTGTGGCTTGCTT    697
                     |||||.||..||||.||.|||.|.||.|| ||| ||.||||||||.||.|
BPUM_2122___g    649 TATATTGGAAAACCTGAAGAGGTGGCAGC-GTGTGCTGTGTGGCTGGCAT    697

BSNT_00690___    698 CGAAGGAATCCAGCTATGTTACAGGCATCACATTGTTTGCGGACGGCGGA    747
                     |.||.||..|.|||||.||.||||||.|.||..|.|.||.|||.||.||.
BPUM_2122___g    698 CAAAAGAGGCAAGCTACGTGACAGGCTTGACGCTCTATGTGGATGGAGGC    747

BSNT_00690___    748 ATGACGAAATATCCTTCTTTCCAGGCAGGCCGCGGTTAA    786
                     |||||.||.||||||...|||||.|||||....||.|||
BPUM_2122___g    748 ATGACTAAGTATCCTGGCTTCCAAGCAGGAAAAGGATAA    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00690 and BPUM_2122

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
